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Table 5 Phylogenetic signal, saturation of substitution process, p-distances, and effective codon usage in neuropterid PCGs

From: The mitochondrial genome of the ascalaphid owlfly Libelloides macaronius and comparative evolutionary mitochondriomics of neuropterid insects

pcg/PROTEIN %FRQ m-slope avg-pd avg-ENC
pooled-(α+β) (full) 100 0.466 0.247 ± 0.034 34.758 ± 2.640
POOLED-(α+β) (FULL) 100 0.684 0.262 ± 0.062 n.a.c.
pooled-α (alpha) 100 0.458 0.248 ± 0.030 33.783 ± 2.111
POOLED-α (ALPHA) 98.6 0.676 0.238 ± 0.055 n.a.c.
pooled-β (beta) 92.86 0.442 0.246 ± 0.040 31.898 ± 1.603
POOLED-β (BETA) 94.3 0.625 0.297 ± 0.073 n.a.c.
nad2 61.43 0.392 0.346 ± 0.037 34.321 ± 3.279
NADH2 77.1 0.436 0.430 ± 0.067 n.a.c.
cox1 94.28 0.384 0.189 ± 0.023 33.991 ± 1.584
COI 91.4 0.908 0.105 ± 0.035 n.a.c.
cox2 75.71 0.491 0.209 ± 0.036 34.840 ± 4.054
COII 88.6 0.867 0.174 ± 0.076 n.a.c.
atp6 88.57 0.482 0.244 ± 0.034 34.105 ±2.770
ATP6 94.3 0.591 0.215 ± 0.061 n.a.c.
cox3 98.86 0.390 0.220 ± 0.032 33.890 ± 2.895
COIII 97.1 0.845 0.191 ± 0.059 n.a.c.
nad3 62.86 0.394 0.280 ± 0.032 30.720 ± 4.398
NADH3 70 0.751 0.313 ± 0.068 n.a.c.
nad5 84.28 0.377 0.249 ± 0.042 33.086 ± 2.306
NADH5 89.9 0.639 0.300 ± 0.078 n.a.c.
nad4 80.00 0.436 0.254 ± 0.044 31.771 ± 2.270
NADH4 88.6 0.608 0.315 ± 0.075 n.a.c.
nad4L 68.57 0.551 0.262 ± 0.044 31.150 ± 4.875
NADH4L 71.4 0.571 0.336 ± 0.067 n.a.c.
nad6 65.71 0.171 0.349 ± 0.045 32.722 ± 3.411
NADH6 82.8 0.360 0.468 ± 0.090 n.a.c.
cob 95.71 0.498 0.214 ± 0.030 32.932 ± 2.162
CYTB 88.6 0.639 0.182 ± 0.059 n.a.c.
nad1 81.43 0.516 0.217 ± 0.038 31.225 ± 2.100
NADH1 82.9 0.673 0.246 ± 0.072 n.a.c.
  1. Pcg-PROTEIN, protein coding gene/relative protein; %FRQ, percent of fully resolved quartets obtained in a maximum likelihood mapping analysis [70]; m-slope, slope of the regression line passing through the origin in a scatter plot analysis of p-distances vs. GTR+I+G - mtREV24/JTT + G + G distances distances; avg-pd, average p-distance; avg-ENC, average-ENC (effective number of codon usage); n.a., not applicable calculation.