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Table 5 Phylogenetic signal, saturation of substitution process, p-distances, and effective codon usage in neuropterid PCGs

From: The mitochondrial genome of the ascalaphid owlfly Libelloides macaronius and comparative evolutionary mitochondriomics of neuropterid insects

pcg/PROTEIN

%FRQ

m-slope

avg-pd

avg-ENC

pooled-(α+β) (full)

100

0.466

0.247 ± 0.034

34.758 ± 2.640

POOLED-(α+β) (FULL)

100

0.684

0.262 ± 0.062

n.a.c.

pooled-α (alpha)

100

0.458

0.248 ± 0.030

33.783 ± 2.111

POOLED-α (ALPHA)

98.6

0.676

0.238 ± 0.055

n.a.c.

pooled-β (beta)

92.86

0.442

0.246 ± 0.040

31.898 ± 1.603

POOLED-β (BETA)

94.3

0.625

0.297 ± 0.073

n.a.c.

nad2

61.43

0.392

0.346 ± 0.037

34.321 ± 3.279

NADH2

77.1

0.436

0.430 ± 0.067

n.a.c.

cox1

94.28

0.384

0.189 ± 0.023

33.991 ± 1.584

COI

91.4

0.908

0.105 ± 0.035

n.a.c.

cox2

75.71

0.491

0.209 ± 0.036

34.840 ± 4.054

COII

88.6

0.867

0.174 ± 0.076

n.a.c.

atp6

88.57

0.482

0.244 ± 0.034

34.105 ±2.770

ATP6

94.3

0.591

0.215 ± 0.061

n.a.c.

cox3

98.86

0.390

0.220 ± 0.032

33.890 ± 2.895

COIII

97.1

0.845

0.191 ± 0.059

n.a.c.

nad3

62.86

0.394

0.280 ± 0.032

30.720 ± 4.398

NADH3

70

0.751

0.313 ± 0.068

n.a.c.

nad5

84.28

0.377

0.249 ± 0.042

33.086 ± 2.306

NADH5

89.9

0.639

0.300 ± 0.078

n.a.c.

nad4

80.00

0.436

0.254 ± 0.044

31.771 ± 2.270

NADH4

88.6

0.608

0.315 ± 0.075

n.a.c.

nad4L

68.57

0.551

0.262 ± 0.044

31.150 ± 4.875

NADH4L

71.4

0.571

0.336 ± 0.067

n.a.c.

nad6

65.71

0.171

0.349 ± 0.045

32.722 ± 3.411

NADH6

82.8

0.360

0.468 ± 0.090

n.a.c.

cob

95.71

0.498

0.214 ± 0.030

32.932 ± 2.162

CYTB

88.6

0.639

0.182 ± 0.059

n.a.c.

nad1

81.43

0.516

0.217 ± 0.038

31.225 ± 2.100

NADH1

82.9

0.673

0.246 ± 0.072

n.a.c.

  1. Pcg-PROTEIN, protein coding gene/relative protein; %FRQ, percent of fully resolved quartets obtained in a maximum likelihood mapping analysis [70]; m-slope, slope of the regression line passing through the origin in a scatter plot analysis of p-distances vs. GTR+I+G - mtREV24/JTT + G + G distances distances; avg-pd, average p-distance; avg-ENC, average-ENC (effective number of codon usage); n.a., not applicable calculation.