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Table 3 Significant (P < 0.0001) SNP in the GWAS analyses of CHILLP8 and P8FAT

From: The effect of measurement error of phenotypes on genome wide association studies

SNP   gene
symbol
  Chr   position
(bp)
  Allele   fA   b
(mm)
  s.e.   P
CHILLP8
ARS-BFGL-
NGS-97163
  proximal
SOX14
  1   133446995   G   0.01   2.85   0.64   1.1 × 10-5
BTB-
00174922
  proximal
SEMA3D
  4   36143304   C   0.98   -2.77   0.64   1.9 × 10-5
BTB-
00174955
  proximal
SEMA3D
  4   36253391   G   0.98   -2.77   0.64   1.9 × 10-5
Hapmap55575-
rs29016266
  UNC5C   6   31006416   C   0.31   0.77   0.19   6.1 × 10-5
ARS-BFGL-
NGS-100395
  TNC   8   109649680   C   0.23   -0.81   0.20   4.6 × 10-5
BTB-
01530788
  XKR4   14   22720373   C   0.21   1.06   0.22   1.6 × 10-6
BTB-
01530836
  XKR4   14   22768980   G   0.79   -1.08   0.22   1.2 × 10-6
BTB-
00557585
  XKR4   14   22803366   C   0.21   1.02   0.22   4.4 × 10-5
BTB-
00557532
  distal XKR4   14   22838801   G   0.21   0.93   0.22   2.8 × 10-5
Hapmap53460-
rs29027620
  SUCLG2   22   34764990   G   0.41   -0.69   0.17   3.5 × 10-5
P8FAT
Hapmap42233-
BTA-49670
  proximal
LOC615631
  1   83842132   C   0.83   -1.08   0.27   8.7 × 10-5
Hapmap50089-
BTA-75090
  DMC1   5   117300831   G   0.06   -2.12   0.44   1.8 × 10-6
ιHapmap55575-
rs29016266
  UNC5C   6   31006416   C   0.30   0.94   0.24   9.8 × 10-5
BTB-
00529060
  TLE1   8   60156808   G   0.18   -1.21   0.31   8.8 × 10-5
Hapmap32434-
BTC-011497
  NSMAF   14   24607054   G   0.65   0.94   0.21   7.4 × 10-6
UA-IFASA-
7902
  TOX   14   24933303   C   0.46   0.85   0.22   9.0 × 10-5
  1. A Allele frequency across the entire sample