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Table 3 Significant (P < 0.0001) SNP in the GWAS analyses of CHILLP8 and P8FAT

From: The effect of measurement error of phenotypes on genome wide association studies

SNP

 

gene

symbol

 

Chr

 

position

(bp)

 

Allele

 

fA

 

b

(mm)

 

s.e.

 

P

CHILLP8

ARS-BFGL-

NGS-97163

 

proximal

SOX14

 

1

 

133446995

 

G

 

0.01

 

2.85

 

0.64

 

1.1 × 10-5

BTB-

00174922

 

proximal

SEMA3D

 

4

 

36143304

 

C

 

0.98

 

-2.77

 

0.64

 

1.9 × 10-5

BTB-

00174955

 

proximal

SEMA3D

 

4

 

36253391

 

G

 

0.98

 

-2.77

 

0.64

 

1.9 × 10-5

Hapmap55575-

rs29016266

 

UNC5C

 

6

 

31006416

 

C

 

0.31

 

0.77

 

0.19

 

6.1 × 10-5

ARS-BFGL-

NGS-100395

 

TNC

 

8

 

109649680

 

C

 

0.23

 

-0.81

 

0.20

 

4.6 × 10-5

BTB-

01530788

 

XKR4

 

14

 

22720373

 

C

 

0.21

 

1.06

 

0.22

 

1.6 × 10-6

BTB-

01530836

 

XKR4

 

14

 

22768980

 

G

 

0.79

 

-1.08

 

0.22

 

1.2 × 10-6

BTB-

00557585

 

XKR4

 

14

 

22803366

 

C

 

0.21

 

1.02

 

0.22

 

4.4 × 10-5

BTB-

00557532

 

distal XKR4

 

14

 

22838801

 

G

 

0.21

 

0.93

 

0.22

 

2.8 × 10-5

Hapmap53460-

rs29027620

 

SUCLG2

 

22

 

34764990

 

G

 

0.41

 

-0.69

 

0.17

 

3.5 × 10-5

P8FAT

Hapmap42233-

BTA-49670

 

proximal

LOC615631

 

1

 

83842132

 

C

 

0.83

 

-1.08

 

0.27

 

8.7 × 10-5

Hapmap50089-

BTA-75090

 

DMC1

 

5

 

117300831

 

G

 

0.06

 

-2.12

 

0.44

 

1.8 × 10-6

ιHapmap55575-

rs29016266

 

UNC5C

 

6

 

31006416

 

C

 

0.30

 

0.94

 

0.24

 

9.8 × 10-5

BTB-

00529060

 

TLE1

 

8

 

60156808

 

G

 

0.18

 

-1.21

 

0.31

 

8.8 × 10-5

Hapmap32434-

BTC-011497

 

NSMAF

 

14

 

24607054

 

G

 

0.65

 

0.94

 

0.21

 

7.4 × 10-6

UA-IFASA-

7902

 

TOX

 

14

 

24933303

 

C

 

0.46

 

0.85

 

0.22

 

9.0 × 10-5

  1. A Allele frequency across the entire sample
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