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Table 3 GO terms significantly represented among up-regulated genes in digestive gland compared to gills tissue

From: Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring

  Term Count p-value F.E.
KP dre00982:Drug metabolism 8 3.9E-05 5.9
  dre00980:Metabolism of xenobiotics by cytochrome P450 8 3.9E-05 5.9
  dre00480:Glutathione metabolism 9 8.8E-04 3.7
  dre04142:Lysosome 14 1.9E-03 2.4
BP GO:0055114~oxidation reduction 39 6.4E-06 2.0
  GO:0048468~cell development 15 6.7E-06 3.6
  GO:0040008~regulation of growth 11 7.2E-06 4.7
  GO:0001558~regulation of cell growth 10 3.2E-05 4.6
  GO:0009308~amine metabolic process 17 4.2E-05 2.9
  GO:0022008~neurogenesis 14 4.2E-05 3.3
  GO:0030182~neuron differentiation 12 4.6E-05 3.8
  GO:0048699~generation of neurons 13 8.2E-05 3.4
  GO:0016052~carbohydrate catabolic process 13 2.3E-04 3.1
  GO:0030154~cell differentiation 22 2.3E-04 2.2
  GO:0048869~cellular developmental process 22 8.4E-04 2.1
  GO:0005975~carbohydrate metabolic process 18 2.2E-03 2.1
  GO:0007399~nervous system development 14 2.5E-03 2.4
  GO:0006066~alcohol metabolic process 13 7.7E-03 2.2
  GO:0009653~anatomical structure morphogenesis 20 1.1E-02 1.8
  GO:0006508~proteolysis 29 1.2E-02 1.5
  GO:0006629~lipid metabolic process 12 1.3E-02 2.2
CC GO:0005576~extracellular region 20 1.13E-05 2.88
  GO:0016021~integral to membrane 40 2.11E-05 1.85
  GO:0031224~intrinsic to membrane 40 2.44E-05 1.84
  GO:0016020~membrane 55 3.34E-05 1.57
  GO:0044425~membrane part 42 0.001042 1.54
MF GO:0030246~carbohydrate binding 29 2.55E-15 4.56
  GO:0005529~sugar binding 21 2.06E-11 4.69
  GO:0003824~catalytic activity 142 4.26E-06 1.29
  GO:0016491~oxidoreductase activity 46 1.69E-05 1.81
  GO:0005509~calcium ion binding 27 5.43E-05 2.18
  GO:0008233~peptidase activity 30 5.02E-04 1.85
  GO:0070011~peptidase activity, acting on L-amino acid peptides 29 5.42E-04 1.87
  GO:0004175~endopeptidase activity 25 5.63E-04 1.99
  GO:0004197~cysteine-type endopeptidase activity 11 1.10E-03 3.04
  GO:0016787~hydrolase activity 59 2.99E-03 1.39
  GO:0008234~cysteine-type peptidase activity 11 3.79E-03 2.66
  GO:0004872~receptor activity 18 3.97E-03 2.01
  1. Here are the Biological Process (BP), Cellular Component (CC) and Molecular Function (MF) represented by at least 10 genes. Significantly represented KEGG pathways (KP) are also reported. Gene count, p-value and fold enrichment (F.E.) corresponding to each term are indicated.
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BMC Genomics

ISSN: 1471-2164

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