Skip to main content

Table 5 Comparison between sense and antisense probes for each probe pair

From: Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring

  FC < 1.5 1.5 < FC < 3 3 < FC < 10 FC > 10 TOTAL
GILLS
total 1,958 1,635 2,118 8,629 14,340
F LS < 10 1,683 1,197 1,319 4,920 9,119
10 < F LS < 100 194 296 592 2,872 3,954
100 < F LS < 1000 66 119 162 707 1,054
F LS > 1000 15 23 45 130 213
DIGESTIVE GLAND
total 2,061 1,909 2,646 8,411 15,027
F LS < 10 1,783 1,451 1,936 5,530 10,700
10 < F LS < 100 227 358 583 2,174 3,342
100 < F LS < 1000 45 84 105 583 817
F LS > 1000 6 16 22 124 168
  1. The number of probes belonging to each Fold Change (FC) classes (FC < 1.5, 1.5 < = FC < 3, 3 < = FC < 10, FC > = 10) is reported. Probes are also distinguished according to the mean fluorescence value of the probe showing the lower signal (FLS, Fluorescence Lower Signal).