Skip to main content

Advertisement

Table 1 Taxon table and Mauve results

From: Genome-level homology and phylogeny of Shewanella (Gammaproteobacteria: lteromonadales: Shewanellaceae)

    LCBs present in all taxa LCBs present in subsets of taxa  
Taxon RefSeq accession Genome length bp covered % of genome # of genes bp covered % of genome locality
Aeromonas hydrophila ATCC 7966 NC_008570 4,744,448 1,132,632 23.9 1,096 1,971,555 41.6 Fresh and marine [3]
Alteromonas macleodii deep ecotype NC_011138 4,412,282 1,209,099 27.4 1,223 1,607,063 36.4 Mediterranean Sea [4]
Colwellia psychrerythraea 34H NC_003910 5,373,180 1,272,052 23.7 1,279 2,130,197 39.6 Arctic sediments [5]
Shewanella amazonensis SB2B NC_008700 4,306,142 1,312,077 30.5 1,279 3,228,613 79.4 Baltic Sea 120 m [6]
Shewanella baltica OS223 NC_011663 5,145,902 1,596,790 31.0 1,504 4,924,714 95.7 Baltic Sea 240 m [79]
Shewanella baltica OS155 NC_009052 5,127,376 1,515,912 29.6 1,469 4,778,750 93.2 Baltic Sea 240 m [79]
Shewanella baltica OS185 NC_009665 5,229,686 1,579,905 30.2 1,511 4,997,928 95.6 Baltic Sea 240 m [79]
Shewanella baltica OS195 NC_009997 5,347,283 1,572,889 29.4 1,496 5,038,451 94.2 Baltic Sea 240 m [79]
Shewanella denitrificans OS217 NC_007954 4,545,906 1,318,644 29.0 1,244 2,749,058 60.5 Baltic Sea deep [10]
Shewanella frigidimarina NCIMB 400 NC_008345 4,845,257 1,306,074 27.0 1,253 3,068,494 63.3 North Sea [11]
Shewanella halifaxensis HAW-EB4 NC_010334 5,226,917 1,469,687 28.1 1,407 4,727,461 90.4 Nova Scotia [12]
Shewanella loihica PV-4 NC_009092 4,602,594 1,339,527 29.1 1,306 3,377,749 73.4 Hawaii, USA [13]
Shewanella oneidensis MR-1 NC_004347 4,969,803 1,525,080 30.7 1,479 4,360,652 87.7 Oneida Lake, USA [14]
Shewanella pealeana ATCC 700345 NC_009901 5,174,581 1,485,394 28.7 1,424 4,573,456 88.4 Atlantic Ocean [15]
Shewanella piezotolerans WP3 NC_011566 5,396,476 1,485,147 27.5 1,482 4,252,921 78.8 Pacific Ocean [16]
Shewanella putrefaciens CN-32 NC_009438 4,659,220 1,596,811 34.3 1,559 4,351,757 93.4 Fresh and marine [1, 17]
Shewanella sediminis HAW-EB3 NC_009831 5,517,674 1,477,164 26.8 1,391 4,444,654 80.6 Nova Scotia [18]
Shewanella sp. ANA-3 NC_008577 4,972,204 1,494,516 30.1 1,394 4,647,695 93.5 Woods Hole, USA [19]
Shewanella sp. MR-7 NC_008322 4,792,610 1,478,293 30.8 1,392 4,564,063 95.2 Black Sea [14]
Shewanella sp. MR-4 NC_008321 4,706,287 1,478,804 31.4 1,499 4,567,658 97.1 Black Sea [14]
Shewanella sp. W3-18-1 NC_008750 4,708,380 1,578,878 33.5 1,517 4,443,111 94.4 Coastal Pacific [20]
Shewanella woodyi ATCC 51908 NC_010506 5,935,403 1,503,207 25.3 1,476 4,442,801 74.9 Mediterranean Sea [21]
# of LCBs    243    3,004   
alignment length    3,361,015    12,456,624