Table 5 Sites experimentally tested for in vivo AtoC binding
Result | Site | Gene | Motif | Strand | Site distance from TSS (Refseq) | Gene product | |
|---|---|---|---|---|---|---|---|
+ | GCTATGCAGAAATTTGCACA | atoD | 1,2,3,4 | (+) | -184 | -165 | acetyl-CoA: acetoacetyl-CoA transferase, subunit |
+ | GCTATGCAGAAAATTGCGCA | atoD | 1,2,4 | (-) | -163 | -144 | acetyl-CoA: acetoacetyl-CoA transferase, subunit |
+ | GCTATAGAAATAATTACACA | dmsA | 1,2 | (-) | -69 | -50 | dimethyl sulfoxide reductase, anaerobic, subunit A [25] |
+ | GCCATGCGGGGATTTAATCA | puuP | 1 | (+) | -148 | -129 | putrescine importer [24] |
+ | GCCGTCCAGATGTTTACACA* | metR-metE | 1 | (-) | -87, -170 | -68, -151 | transcriptional activator [30] |
+ | GCGATTGTAGGGATTGCTCA* | trmA-btuB | 1,(2) | (+) | -49, -340 | -30, -321 | tRNA (uracil-5-)-methyltransferase/ outer membrane transporter [31] |
+ | ACTATACGGAAAATTCCACT* | ykgA-ykgQ | 1,2 | (-) | -235, -55 | -216, -36 | Putative transcriptional activator [32] |
+ | GTGATGGGATTATTTGATCT* | aegA-narQ | 1 | (-) | -147, -79 | -128, -60 | predicted fused oxidoreductase: FeS binding subunit and sensory HK in TCS with NarP [33, 34] |
+ | GCCTCGGAGGTATTTAAACA* | cpxR-cpxP | 1 | (-) | -21, -149 | -2, -130 | response regulator in TCS with CpxA/ periplasmic protein; combats stress [36] |
+ | GCGAGGCGGGTAATTAGACA | ymiA | 1 | (-) | -199 | -180 | small predicted membrane protein [35] |
+ | GGCCCAATTTACTGCTTAGG | crr | 1,2 | (+) | -28 | -9 | glucose-specific PTS component [26] |
+ | GCGGTGCAGGAGATTGCACA | fliT | 1 | (+) | 127 | 146 | predicted chaperone (flagellum) [46] |
+ | CCGGTCCAGGAATTTACTCA | narG | 1 | (-) | 2 | 21 | nitrate reductase 1, alpha subunit [23] |
+ | GCGAAACGATTAATTACACA | ycjM | 1 | (+) | 94 | 113 | glucosyltransferase predicted [64] |
+ | ACTGTACAGAAAGTTGCTCA | yeaM | 1 | (-) | 668 | 687 | transcription regulator (predicted) [65] |
+ | GCGGGTCAGGTAATTGCACA | gadA | 1 | (-) | 959 | 978 | glutamate decarboxylase A, PLP-dependent [66] |
+ | GACATGCAGTTGATTACACA | eutR | 1 | (+) | 783 | 802 | predicted transcription regulator [67] |
+ | GCGATCCAAAAGTTTACTCA | narZ | 1 | (+) | 0 | + 19 | nitrate reductase 2 alpha subunit [23] |
+ | CGGAGATTTCCCGCAAAGCC* | rtcB-rtcR | 2 | (+) | -145, -64 | -126, -45 | sigma-54-dependent transcriptional regulator of rtcBA [27] |
+ | CGGCAAGTTTCGACATTGCC* | putA-putP | 2 | (+) | -398, -45 | -379, -26 | fused transcriptional regulator/proline dehydrogenase/ carboxproline:sodium symporter [37] |
- | GGGCATTTTCCTGCAAAACC* | rhaT-sodA | 3 | (+) | -167, -138 | -148, -119 | |
- | GGATGATGTTCTGCATAGCA | adhP | 3 | (+) | -35 | -16 | ethanol-active dehydrogenase/acetaldehyde-active reductase [38] |
- | TTTATAGAAATAGATGCACG | nirB | 4 | (-) | -205 | -186 | nitrite reductase, large subunit, NAD(P)H-binding [41] |
+ | TATGTGTAGAAAATTAAACA | borD | 4,3 | (+) | -59 | -40 | DLP12 prophage; predicted lipoprotein [28] |
+ | GTTCAGTATAAAAGGGCATG | acrD | 2 | (+) | -128 | -109 | aminoglycoside/multidrug efflux system [29] |
- | GAAATAGAAATAGTTGAAAG | ykgE | 4 | (-) | -472 | -453 | predicted oxidoreductase [32] |
+ | CCGGATAAGGCGTTTACGCC | yjcH | 4 | (+),(-) | -114, -122 | -95, -103 | conserved inner membrane protein/ acetate transport [44] |
- | CCGGATAAGACGTTTACGCC | yafJ | 4 | (+) | -193 | -174 | Unknown function, similarity to type II amidotransfease |
+ | CCGGATAAGGCGTTTACGCC | sseB | 4 | (+) | -125 | -106 | rhodanese-like enzyme [68] |