| |
D. melanogaster
|
A. gambiae
|
|---|
|
Type
|
# Hits
|
Length (bp)
|
% Bases
|
# Hits
|
Length (bp)
|
% Bases
|
|---|
|
(1) Interspersed repeats
| | | | | | |
|
(i) Retrotransposon
|
380
|
45,036
|
0.405%
|
870
|
94,532
|
0.851%
|
|
Non-LTR elements
|
154
|
14,584
|
0.131%
|
151
|
16,570
|
0.149%
|
|
L2/CR1/Rex
|
1
|
67
|
0.001%
|
28
|
1,817
|
0.016%
|
|
R1/LOA/Jockey
|
55
|
4,375
|
0.039%
|
122
|
14,723
|
0.132%
|
|
RTE/Bov-B
|
-
|
-
|
-
|
1
|
30
|
0.000%
|
|
LTR elements
|
226
|
30,452
|
0.274%
|
719
|
77,962
|
0.701%
|
|
Ty1/Copia
|
3
|
238
|
0.002%
|
-
|
-
|
-
|
|
Gypsy/DIRS1
|
181
|
27,142
|
0.244%
|
718
|
77,743
|
0.699%
|
|
(ii) DNA transposons
|
53
|
4,302
|
0.039%
|
154
|
14,817
|
0.133%
|
|
hobo-Activator
|
3
|
363
|
0.003%
|
-
|
-
|
-
|
|
Others
|
40
|
3,364
|
0.030%
|
40
|
2,324
|
0.021%
|
|
(iii) Unclassified
|
48
|
4,816
|
0.043%
|
5
|
309
|
0.003%
|
|
Total interspersed repeats
|
481
|
54,154
|
0.487%
|
1,029
|
109,658
|
0.987%
|
|
(2) Small RNAs
|
1,351
|
422,537
|
3.802%
|
1,274
|
414,435
|
3.729%
|
|
(3) Simple repeats
|
10,282
|
858,898
|
7.728%
|
9,756
|
807,927
|
7.269%
|
|
(4) Low complexity repeats
|
4,258
|
386,684
|
3.479%
|
4,257
|
387,159
|
3.483%
|
|
Total repetitive sequences
| |
1,721,824
|
15.491%
| |
1,718,177
|
15.458%
|
- *The repeat databases of D. melanogaster and A. gambiae were used.
