| |
T. p.
|
P. c.
|
P. t.
| | |
T. p.
|
P. c.
|
P. t.
|
---|
Ala
|
GCG
|
0.03
|
0.03
|
0.08
|
Pro
|
CCG
|
0.07
|
0.03
|
0.03
|
|
GCA
|
0.32
|
0.41
|
0.20
| |
CCA
|
0.36
|
0.42
|
0.16
|
|
GCT
|
0.57
|
0.54
|
0.30
| |
CCT
|
0.54
|
0.51
|
0.27
|
|
GCC
|
0.07
|
0.02
|
0.41
| |
CCC
|
0.03
|
0.04
|
0.54
|
Cys
|
TGT
|
0.86
|
0.85
|
0.24
|
Gln
|
CAG
|
0.06
|
0.14
|
0.58
|
|
TGC
|
0.14
|
0.15
|
0.76
| |
CAA
|
0.94
|
0.86
|
0.42
|
Asp
|
GAT
|
0.81
|
0.81
|
0.36
|
Arg
|
AGG
|
0.02
|
0.17
|
0.45
|
|
GAC
|
0.19
|
0.19
|
0.64
| |
AGA
|
0.95
|
0.74
|
0.16
|
| | | | | |
CGG
|
0.00
|
0.00
|
0.03
|
Glu
|
GAG
|
0.08
|
0.17
|
0.70
| |
CGA
|
0.00
|
0.02
|
0.11
|
|
GAA
|
0.92
|
0.83
|
0.30
| |
CGT
|
0.02
|
0.06
|
0.06
|
| | | | | |
CGC
|
0.00
|
0.01
|
0.18
|
Phe
|
TTT
|
0.89
|
0.95
|
0.62
| | | | | |
|
TTC
|
0.11
|
0.05
|
0.38
|
Ser
|
AGT
|
0.21
|
0.24
|
0.07
|
| | | | | |
AGC
|
0.06
|
0.09
|
0.27
|
Gly
|
GGG
|
0.03
|
0.05
|
0.27
| |
TCG
|
0.03
|
0.03
|
0.12
|
|
GGA
|
0.16
|
0.19
|
0.20
| |
TCA
|
0.32
|
0.20
|
0.10
|
|
GGT
|
0.78
|
0.73
|
0.16
| |
TCT
|
0.34
|
0.42
|
0.24
|
|
GGC
|
0.03
|
0.04
|
0.37
| |
TCC
|
0.04
|
0.03
|
0.20
|
His
|
CAT
|
0.69
|
0.69
|
0.31
|
Thr
|
ACG
|
0.01
|
0.03
|
0.22
|
|
CAC
|
0.31
|
0.31
|
0.69
| |
ACA
|
0.53
|
0.45
|
0.18
|
| | | | | |
ACT
|
0.41
|
0.49
|
0.23
|
Ile
|
ATA
|
0.62
|
0.42
|
0.21
| |
ACC
|
0.06
|
0.03
|
0.37
|
|
ATT
|
0.33
|
0.53
|
0.33
| | | | | |
|
ATC
|
0.06
|
0.05
|
0.46
|
Val
|
GTG
|
0.04
|
0.06
|
0.19
|
| | | | | |
GTA
|
0.49
|
0.35
|
0.20
|
Lys
|
AAG
|
0.04
|
0.11
|
0.64
| |
GTT
|
0.42
|
0.55
|
0.30
|
|
AAA
|
0.96
|
0.89
|
0.36
| |
GTC
|
0.06
|
0.04
|
0.31
|
Leu
|
TTG
|
0.03
|
0.09
|
0.13
|
Trp
|
TGG
|
0.03
|
0.01
|
0.48
|
|
TTA
|
0.75
|
0.74
|
0.14
| |
TGA
|
0.97
|
0.99
|
0.52
|
|
CTG
|
0.01
|
0.01
|
0.09
| | | | | |
|
CTA
|
0.13
|
0.05
|
0.15
|
Tyr
|
TAT
|
0.82
|
0.79
|
0.38
|
|
CTT
|
0.07
|
0.11
|
0.19
| |
TAC
|
0.18
|
0.21
|
0.62
|
|
CTC
|
0.01
|
0.01
|
0.31
| | | | | |
| | | | |
Stop
|
TAG
|
0.00
|
0.00
|
0.39
|
Met
|
ATG
|
1.00
|
1.00
|
1.00
| |
TAA
|
1.00
|
1.00
|
0.61
|
Asn
|
AAT
|
0.79
|
0.77
|
0.34
| |
rare
|
28
|
23
|
5
|
|
AAC
|
0.21
|
0.23
|
0.66
| |
Nc
|
31.5
|
33.5
|
52.1
|
- Bold values indicate the most frequent synonymous codons for each amino acid and species, italic values indicate rare codons. The overall number of rare codons (rare) and the effective number of codons (Nc) are also given for each species.