Table 3 Performance and validation of SNPs based on origin of discovery
From: The development and characterization of a 60K SNP chip for chicken
Group | Failed design | Excluded from analysis | Monomorphic | Polymorphic | ||||
|---|---|---|---|---|---|---|---|---|
| Â | number | % | number | % | number | % | number | % |
All SNPs | 3164 | 5.0 | 1116 | 1.9 | 2227 | 3.9 | 54293 | 94.2 |
dbSNP confirmed | 893 | 5.1 | 64 | 0.4 | 27 | 0.2 | 16629 | 99.5 |
dbSNP random | 886 | 5.1 | 764 | 4.6 | 1581 | 9.6 | 14087 | 85.7 |
Illumina sequencing | 1431 | 5.3 | 285 | 1.1 | 618 | 2.4 | 24356 | 96.4 |