ngs_backbone: a pipeline for read cleaning, mapping and SNP calling using Next Generation Sequence

BMC Genomics

Table 3 SNVs selected in the different collections using different ngs_backbone filters.

SA: Sanger collection: SNVs detected with Sanger sequences.
IL: Illumina collection: SNVs detected with Illumina sequences.
HL: Higher likelihood collection: SNVs detected with Illumina and Sanger sequences.
CO: Common collection: SNVs detected in Illumina and Sanger collections.
PO: Polymorphic collection: SNVs with an estimated frequency of most common allele under 0.67.
EU: Easily usable SNVs set: SNVs selected using UCR I30 and CL30 filters.

ISSN: 1471-2164