ngs_backbone: a pipeline for read cleaning, mapping and SNP calling using Next Generation Sequence

BMC Genomics

Table 4 Statistics for assayed SNVs in the different collections.

	SNVs	HRM detected	% Polymorphic markers	Average frequency b	PIC c
SA	14	--	21.4	0.98	0.04
IL	14	12	41.7	0.95	0.09
CO	33	28	71.4	0.85	0.22
PO	15	13	69.2	0.80	0.28

a Percentage of polymorphic markers: number of polymorphic markers with respect to detected HRM markers or total markers for each set.
b Average frequency of most frequent allele of all detected markers or total markers for each set.
c PIC (polymorphic information index) of all detected markers or total markers for each set.

ISSN: 1471-2164