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Table 5 Association of appressoria small RNAs with ESTs and ESS.

From: Diverse and tissue-enriched small RNAs in the plant pathogenic fungus, Magnaporthe oryzae

 

Genomea

Intergenica

Genesb

 

Read Countc

Featuresd

Read Count

Features

Read Count

Features

ESSe

5608

2249

29

-

1575

518

   MPSS

900

88

5

-

401

39

MYC

817

49

4

-

325

21

APP

764

39

4

-

378

19

   SAGE

1188

62

10

-

431

26

   CPA-sRNA

5461

2099

20

-

1477

455

EST

4310

3436

11

-

1618

1770

EST or ESS

6018

3865

35

-

1953

2033

  1. a Small RNAs that overlap the sequence of ESS and/or ESTs at the same genome or intergenic location.
  2. b Small RNAs that map to transcriptionally (ESS and/or EST) supported gene loci.
  3. c Number of small RNAs that map to a given feature and containing ESS and/or EST transcriptional evidence.
  4. d Number of features containing ESS and/or EST evidence associated with small RNAs.
  5. e ESS (Expressed Short Sequence) are either MPSS, SAGE or CPA-sRNA.