Comparative genomic analysis of Vibrio parahaemolyticus: serotype conversion and virulence

BMC Genomics

Table 1 Six V. parahaemolyticus strains analyzed during this study

Year	Strain	Source	Serotype	tdh	trh	# contigs	Contig N50^†§ (bp)	Max. Contig	Reference
1983^‡	AQ3810	Singapore	O3:K6	+	-	1037	52609	295134	[9]
1985^‡	AQ4037	Maldives	O3:K6	-	+	164	67710	241746	This study
1996	RIMD2210633	Thailand	O3:K6	+	-	2	N.A.	3288558	[7]
1996	Peru466	Peru	O3:K6	+	-	149	81497	273858	This study
1998	AN5034	Bangladesh	O4:K68	+	-	54	346246	1183081	This study
2005	K5030	India	O3:K6	+	-	164	62978	657114	This study

^†The contig N50 is the length of the smallest contig in the set that contains the fewest (largest) contigs whose combined length represents at least 50% of the assembly [41].
^§The contig N50 was calculated from the Celera assembly, not the contigs submitted to Genbank.
^‡Pre-pandemic years.
N.A. Not Applicable.

ISSN: 1471-2164