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Table 3 Alignment of contigs to the A. thaliana proteome.

From: Single nucleotide polymorphism discovery in elite north american potato germplasm

Cultivar

No. contigs with alignmenta

No.non-redudundant alignmentb

Atlantic

27,934

13,752

Premier Russet

32,369

14,563

Snowden

33,503

14,608

Bintje

2,111

1,793

Kennebec

9,320

6,193

Shepody

9,163

6,202

  1. aContigs were search against the A. thaliana proteome using an E value cutoff of <10-5. Only the top alignment was retained.
  2. bMultiple alignments to the same A. thaliana protein were condensed to provide a non-redundant estimation of representation of the A. thaliana proteome.
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BMC Genomics

ISSN: 1471-2164

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