Comparative genomics of Escherichia coli isolated from patients with inflammatory bowel disease

BMC Genomics

Table 5 Prevalence of ExPEC virulence and fitness genes among the IBD isolates

Product	CFT073	p7	p13	p19A	p19B	p22	p29	p30	HM95	HM413	HM419	HM580	HM605	HM615
Adhesins
F1C fimbriae	+	+/-	-	+	+/-	+	-	+/-	+/-	+/-	+/-	+/-	+/-	+/-
P fimbriae	+	+/-	-	+	+/-	+/-	+/-	+	+/-	-	+/-	+	+	+
Pix fimbriae	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-
F17 fimbriae	-	+	-	+	-	-	-	-	+/-	-	-	-	-	-
CS12 fimbriae	-	-	-	-	-	-	-	-	-	-	-	-	-	-
yapH	+	+	+	+	-	-	-	-	+	+	-	-	-	-
ShlA/HecA/FhaA exoprotein family	+	+	+	+	-	+	-	-	+	+	-	-	-	-
Toxins
RTX family exoprotein	+	+	-	+	-	-	-	-	-	+	-	-	-	-
Haemoglobin protease	+	+	+	+	-	+	-	+	-	+	-	-	+	+
hly	+	+	+/-	+	+/-	+/-	-	-	+/-	+/-	-	-	-	-
sat	+	+	-	+	+	+	+	-	-	-	-	+	-	-
cdt	-	-	-	-	-	-	-	-	-	+	-	-	-	-
cnf1	-	+	-	+	-	-	-	-	-	-	-	-	-	-
Nutrition
iro	+	-	+	+	-	+	+/-	+/-	-	+	-	-	+	+
pgt	+	+/-	-	-	-	-	+/-	+/-	-	-	-	-	+	+
Other
tcpC	+	-	-	+	-	-	-	-	-	-	-	-	-	-
shiA homolog	+	+	-	+	+	+	+	+	+	-	+	+	+	+
pntC	-	-	+	-	-	-	-	-	-	-	-	-	-	-
ibeA	-	-	+	-	-	-	-	-	-	-	-	-	-	-
K1 capsule genes	-	-	-	-	-	-	-	+	-	-	-	-	+	+
K2 capsule genes	+	+	-	+	-	-	-	-	-	-	-	-	-	-
K15 capsule genes	-	-	-	-	-	-	-	-	-	-	-	-	-	-
putative FMN-dependent dehydrogenase	-	+	-	+	-	-	-	-	-	-	-	-	-	-
PAI-CFT073-asnW (pks)	+	+	-	+	+/-	+	+/-	-	+/-	+	-	-	-	-
GimB island	-	-	-	-	-	-	-	+	-	-	-	-	+	+

ISSN: 1471-2164