Table 1 Summary of contig length properties for the total number of contigs as well as contigs larger than 200bp, resulting from different assemblers and meta-assembly, respectively
all contigs | > 200bp contigs | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
Velvet | NGen | ORK21 | ORK31 | Meta | Velvet | NGen | ORK21 | ORK31 | Meta | |
Min | 61 | 31 | 55 | 52 | 61 | 200 | 200 | 200 | 200 | 200 |
Max | 2257 | 2435 | 2070 | 2551 | 2667 | 2257 | 2435 | 2070 | 2551 | 2667 |
Mean | 120 | 303 | 267 | 309 | 432 | 398 | 428 | 442 | 443 | 536 |
Median | 93 | 217 | 179 | 213 | 341 | 326 | 338 | 359 | 359 | 442 |
Total | 220,153 | 57,986 | 52,477 | 41,590 | 54,450 | 20,346 | 31,898 | 23,816 | 22,089 | 39,941 |