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Table 2 Summary statistics for windows representing extreme |iHS| and FST

From: Application of site and haplotype-frequency based approaches for detecting selection signatures in cattle

Chr

Position (Mbp)

|iHS| or FST1

Breed2

Gene/entry3 (n)

Candidate Gene

Gene name or function

1

79-81.5

2.10

HR

6

SST

Somatostatin

2

34.5-36

2.26

HR

6

GCG

Glucagon

     

FAP

Fibroblast activation protein, alpha

2

70-73

2.06

MG/BE/SH/BR

5

-

-

6

61.75-62.75

3.41

BS

13

UGDH

UDP-glucose dehydrogenase

     

APBB2

Amyloid beta (A4) precursor protein-binding, family B, member 2 (Fe65-like)

6

80-83

 

HR

9

SRD5A2L2

Lipid metabolism

7

39-41

1.90

AA

15

COL23A1

Collagen, type XXIII, alpha 1

     

MGAT1

Fertilization and early development of the embryos

10

29-31

2.24

BE/SH

8

ACTC1

Actinin, Involved in the formation of filaments

12

36-38

2.03

AA

19

ATP12A

ATPase activity

13

30.5-31.5

2.68

BS

8

TRDMT1

Cysteine and methionine metabolism

14

64-65

2.02

AA

6

MATN2

Developing cartilage rudiments

16

19.75-20.25

2.60

HS

2

SPATA17

Spermatogenesis associated 17

16

39-40

1.98

AA

14

NMNAT1

Methylenetetrahydrofolate reductase (NADPH) activity

17

31-32.5

2.05

AA/HR

15

PGRMC2

Progesterone receptor membrane component 2

18

57.25-57.75

2.20, 0.78

HS

30

SIGLEC5,8,10

Sialic acid binding Ig-like lectin 5, 8, 10

1

12-13

0.92

-

0

-

 

2

111.5-112

0.98

-

11

ABCB6

ATP-binding cassette, sub-family B (MDR/TAP), member 6

     

GLB1L

Galactosidase, beta 1-like

3

119.2-119.7

0.92

-

11

SMCP

Sperm mitochondria-associated cysteine-rich protein

7

53.25-53.75

0.74

-

4

FGF1

A growth factor which stimulates growth or differentiation, key role in embryonic development

9

42-43

0.78

-

12

LACE1

Lactation elevated 1

     

PPIL6

Peptidylprolyl isomerase (cyclophilin)-like 6

13

53.5-54

0.98

-

7

SIRPA

Signal-regulatory protein

16

4.75-5.25

098

-

5

-

-

17

39.5-40.5

0.98

-

4

-

-

18

58.25-58.75

0.98

-

15

-

-

20

15.25-15.75

0.92

-

8

ADAMTS6

-

22

35.25-35.75

0.77

-

3

-

-

  1. 1 FSTvalues are in italic
  2. 2 Breed name abbreviations are as follows: Australian Angus (AN), Belmond Red (BE), Brahman (BR), Brown Swiss (BS), Hereford (HR), Holstein (HS), Murray Gray (MG), Santa Gertrudis (SG), Shorthorns (SH)
  3. 3 Other kind of entries like mRNA, protein, etc submitted in NCBI.