Figure 2
From: Implication of next-generation sequencing on association studies
LD pattern among low frequency alleles and common alleles. The proportions of pair-wise SNPs with r2 between common and common SNPs (cc), low frequency and common SNPs (rc), and low frequency and low frequency SNPs (rr) in five intervals of r2 within each category of the MAF of SNPs (i.e., cc, rc and rr categories) for low coverage pilot dataset. We plotted graphs under three inter-marker distances, A) 50 kb, B) 100 kb and C) 200 kb where r2 between the target SNP and its all nearby SNPs within the distance was calculated.