Table 1 Deep tag sequencing statistics
| Â | RefSeq | GeneID | Genscan | RNAgenes | total | % of total | % of unamb. | Averages/ run |
|---|---|---|---|---|---|---|---|---|
total reads (6 runs) | 54072498 | 14042145 | 6265092 | 5244975 | 54072498 | 100.00% | Â | 9012083.00 |
unambiguous (6 runs) | 24940641 | 3665152 | 779972 | 263786 | 29649551 | 54.83% | 100.00% | 4941591.83 |
   0 mismatches | 18084026 | 286158 | 5470 | 95713 | 18471367 |  | 62.30% | 3078561.17 |
   1 mismatch | 3913853 | 1961500 | 102902 | 87180 | 6065435 |  | 20.46% | 1010905.83 |
   2 mismatches | 2942762 | 1417494 | 671600 | 80893 | 5112749 |  | 17.24% | 852124.83 |
ambiguous (6 runs) | 15083422 | 4111901 | 240145 | 410907 | 19846375 | 36.70% | Â | 3307729.17 |
no matches (6 runs) | 14042145 | 6265092 | 5244975 | 4570282 | 4570282 | 8.45% | Â | 761713.67 |