Table 2 Categorization of P. tricornutum small RNAs.
| Â | PT1 | PT2 | PT3 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Category | Unique sRNA | Percent (%) | Total sRNA | Percent (%) | Unique sRNA | Percent (%) | Total sRNA | Percent (%) | Unique sRNA | Percent (%) | Total sRNA | Percent (%) |
Total | 718770 | 100% | 8924476 | 100% | 596498 | 100% | 5609466 | 100% | 672323 | 100% | 6982282 | 100% |
Exon antisense | 6399 | 0.89% | 10386 | 0.12% | 12995 | 2.18% | 21742 | 0.39% | 16265 | 2.42% | 29367 | 0.42% |
Exon sense | 132234 | 18.40% | 709873 | 7.95% | 157692 | 26.44% | 491026 | 8.75% | 126953 | 18.88% | 468933 | 6.72% |
Intron antisense | 738 | 0.10% | 3668 | 0.04% | 1054 | 0.18% | 6759 | 0.12% | 1331 | 0.20% | 5795 | 0.08% |
Intron sense | 3244 | 0.45% | 10084 | 0.11% | 3334 | 0.56% | 14835 | 0.26% | 3773 | 0.56% | 28637 | 0.41% |
miRNA | 3660 | 0.51% | 36409 | 0.41% | 2821 | 0.47% | 36511 | 0.65% | 3573 | 0.53% | 44646 | 0.64% |
rRNA | 187636 | 26.11% | 5580308 | 62.53% | 101013 | 16.93% | 2708557 | 48.29% | 129970 | 19.33% | 3837474 | 54.96% |
siRNA | 499 | 0.07% | 1206 | 0.01% | 2032 | 0.34% | 6135 | 0.11% | 2483 | 0.37% | 7836 | 0.11% |
snRNA | 395 | 0.05% | 1769 | 0.02% | 358 | 0.06% | 1843 | 0.03% | 384 | 0.06% | 3034 | 0.04% |
snoRNA | 147 | 0.02% | 603 | 0.01% | 130 | 0.02% | 858 | 0.02% | 156 | 0.02% | 1381 | 0.02% |
tRNA | 20630 | 2.87% | 798584 | 8.95% | 13200 | 2.21% | 445663 | 7.94% | 17783 | 2.65% | 703652 | 10.08% |
non-annotateda | 363188 | 50.53% | 1771586 | 19.85% | 301869 | 50.61% | 1875537 | 33.44% | 369652 | 54.98% | 1851527 | 26.52% |