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Table 2 Genome-wide distribution of RsaI repeat fragments and their homologies with SINE and LINEs

From: RsaI repetitive DNA in Buffalo Bubalus bubalis representing retrotransposons, conserved in bovids, are part of the functional genes

S.No. Sequence ID GC level Type of Elements Subclass Position of repeat in sequence Length occupied (bp) Percentage of the sequence in the buffalo genome
1. pDp1 35.46 LINE2 L2 34-220 501 37.64
    LINE1 L1MEc 222-722 187 14.05
    RTE BovB 730-785 532 39.97
     BTLTR 786-855   
     BovB 856-1331   
2. pDp2 38.25 LINE 1 L1MC1s 9-651 643 98.77
3. pDp3 39.47 LTR Elements (ERV_class I) MER67C 7-212 206 34.16
4. pDp4 30.68 SINE BovB 1-159 44 12.98
    LINE (RTE) BovA 160-203 159 46.90
    Low complexity AT rich 245-310 66 19.47