|
t
n
3
|
2
|
3
|
4
|
5
|
6
|
7
|
|---|
|
True positive
|
48
|
23
|
17
|
12
|
9
|
7
|
|
Positive
|
76
|
27
|
20
|
15
|
11
|
9
|
|
Positive predictive value 4
|
0.63
|
0.85
|
0.85
|
0.80
|
0.82
|
0.78
|
- Notes:
- 1. Only deletions longer than 50 bp called for an YRI individual (NA19240) from the 1000 Genomes Project are selected (randomly) for the trio-array CGH validation. Due to the data usage restriction, only validation results for deletions in chromosome 1 are used.
- 2. Not every validation test yields definite result. Inconclusive results are excluded from this table.
- 3. tn, threshold on the number of supportive reads.
- 4. Positive predictive value = True positive/Positive.
