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Table 4 BLASTX hits of contigs and singletons in the eight individual libraries with different proteomes

From: Comparative high-throughput transcriptome sequencing and development of SiESTa, the Silene EST annotation database

Library Contigs
  A. thaliana V. vinifera P. trichocarpa Uniprot
  %hit % unique %hit % unique %hit % unique %hit % unique
SlM 31% 21% 31% 20% 33% 23% 41% 33%
SlF 76% 49% 76% 46% 78% 53% 78% 66%
SlFf 35% 24% 35% 24% 36% 26% 56% 47%
SdM 18% 13% 19% 13% 22% 14% 31% 22%
SdF 31% 22% 31% 21% 32% 24% 49% 43%
SmM 55% 35% 54% 33% 56% 39% 57% 48%
SvH 74% 48% 74% 45% 76% 52% 76% 64%
Ds 73% 47% 73% 43% 74% 51% 75% 63%
Library Singletons
  A. thaliana V. vinifera P. trichocarpa Uniprot
  %hit % unique %hit % unique %hit % unique %hit % unique
SlM 14% 9% 16% 9% 21% 10% 32% 19%
SlF 42% 27% 44% 26% 46% 31% 47% 38%
SlFf 17% 11% 18% 11% 22% 12% 45% 30%
SdM 10% 6% 13% 6% 21% 7% 32% 14%
SdF 16% 10% 18% 10% 22% 11% 39% 25%
SmM 26% 17% 28% 17% 30% 20% 32% 25%
SvH 44% 30% 47% 29% 50% 33% 55% 41%
Ds 46% 33% 46% 32% 48% 36% 49% 42%
  1. Table 4 shows the number of hits for both contigs and singletons. Non-redundant accessions are recorded in the '% unique' column. A cut-off E-value of 1E-4 was used for each database.