Table 4 Putative phenylpropanoid/flavonoid gene probe sets downregulated more than 2- fold in the black (iRT) compared to the brown (irT) soybean seed coata,b
Gene Family | Â | Â | Â | Â | SAM | |
|---|---|---|---|---|---|---|
| Â | Probe Sets | Name | Target Description | Black/brown fold change | P-value | d-score |
Phenyl-propanoid/ | Gma.17605.1.S1_at | CHS1* | Chalcone synthase | 0.028 | 0.000007 | -16.45 |
Flavonoid | GmaAffx.92491.1.S1_s_at | CHS9* | Chalcone synthase | 0.047 | 0.000005 | -19.36 |
pathway | GmaAffx.89828.1.S1_s_at | IFR1-like | Highly similar to isoflavone reductase homolog 1 (IFR1) (93%) | 0.272 | 0.000132 | -4.46 |
| Â | Gma.8455.1.S1_at | sf3'h1* | Flavonoid 3'-hydroxylase | 0.400 | 0.000646 | -3.10 |
| Â | GmaAffx.93221.1.S1_s_at | OOMT-like | Moderately similar to Rosa rugosa orcinol O-methyltransferase (OOMT-A) (72%) | 0.410 | 0.003428 | -2.17 |
| Â | GmaAffx.34868.1.A1_at | LAR1 | Highly similar to Phaseolus coccineus leucoanthocyanidin reductase (LAR) (88%) | 0.443 | 0.000016 | -9.02 |
| Â | Gma.4340.2.S1_a_at | Â | Moderately similar to P. trichocarpa flavonoid O-methyltransferase-related (73.9%) | 0.462 | 0.004180 | -2.08 |
| Â | Gma.10949.1.S1_s_at | Â | Moderately similar to A. thaliana 3-chloroallyl aldehyde dehydrogenase/aldehyde dehydrogenase (NAD)/coniferyl-aldehyde dehydrogenase (ALDH2C4) (75.5%) | 0.495 | 0.000273 | -3.92 |
Transport | GmaAffx.39265.1.S1_at | MATE1 | Weakly similar to A. thaliana antiporter/drug transporter MATE family protein (69.8%) | 0.414 | 0.000265 | -3.95 |