Table 2 Known plant miRNAs identified in melon
From: Analysis of the melon (Cucumis melo) small RNAome by high-throughput pyrosequencing
Annotation | Melon sRNA sequence (5'-3') | Similarity | Number of miRNA sequences | miRNA* sequences | Hit in melon genomea |
|---|---|---|---|---|---|
miR156|a, b, c, d, e, f | UGACAGAAGAGAGUGAGCAC | 100% | 469 | 60 | YES |
miR157|a, b, c | UUGACAGAAGAUAGAGAGCAC | 100% | 269 | 0 | YES |
miR157|d | UGACAGAAGAUAGAGAGCAC | 100% | 19 | 21 | YES |
miR158|a | UCCCAAAUGUAGACAAAGCA | 100% | 1 | 0 | -- |
miR159|a | UUUGGAUUGAAGGGAGCUCUA | 100% | 14651 | 0 | YES |
miR159|b | UUUGGAUUGAAGGGAGCUCUU | 100% | 18 | 0 | -- |
miR159|c | UUUGGAUUGAAGGGAGCUCCU | 100% | 1 | 0 | -- |
miR160|a, b, c | UGCCUGGCUCCCUGUAUGCCA | 100% | 537 | 0 | YES |
miR161|a.1 | UUGAAAGUGACUACAUCGGGG | 100% | 6 | 0 | -- |
miR161|a.2 | UCAAUGCAUUGAAAGUGACUA | 100% | 1 | 0 | -- |
miR162|a, b | UCGAUAAACCUCUGCAUCCAG | 100% | 825 | 0 | YES |
miR164|a, b | UGGAGAAGCAGGGCACGUGCA | 100% | 172 | 1 | YES |
miR165|a, b | UCGGACCAGGCUUCAUCCCCC | 100% | 4 | 0 | -- |
miR166|a, b, c, d, e, f, g | UCGGACCAGGCUUCAUUCCCC | 100% | 65 | 27 | YES |
miR167|a, b | UGAAGCUGCCAGCAUGAUCUA | 100% | 136 | 0 | YES |
miR167|d | UGAAGCUGCCAGCAUGAUCUGG | 100% | 16 | 1 | -- |
miR168|a, b | UCGCUUGGUGCAGGUCGGGAA | 100% | 967 | 0 | YES |
miR169|a | CAGCCAAGGAUGACUUGCCGA | 100% | 3 | 1 | -- |
miR169|b, c | CAGCCAAGGAUGACUUGCCGG | 100% | 76 | 1 | YES |
miR169|h, i, j, k, l, m, n | UAGCCAAGGAUGACUUGCCUG | 100% | 83 | 1 | YES |
miR170|a | UGAUUGAGCCGUGUCAAUAUC | 100% | 3 | 0 | -- |
miR171|a | UGAUUGAGCCGCGCCAAUAUC | 100% | 85 | 5 | YES |
miR171|b, c | UUGAGCCGUGCCAAUAUCACG | 100% | 64 | 0 | YES |
miR172|a | AGAAUCUUGAUGAUGCUGCAU | 100% | 85 | 58 | YES |
miR172|c, d | AGAAUCUUGAUGAUGCUGCAG | 100% | 4 | 0 | YES |
miR172|e | GGAAUCUUGAUGAUGCUGCAU | 100% | 3 | 0 | YES |
miR319|a, b | UUGGACUGAAGGGAGCUCCC | 100% | 2 | 3 | YES |
miR390|a, b | AAGCUCAGGAGGGAUAGCGCC | 100% | 32 | 6 | YES |
miR391|a | UUCGCAGGAGAGAUAGCGCCA | 100% | 1 | 0 | -- |
miR393|a, b | UCCAAAGGGAUCGCAUUGAUC | 100% | 18 | 0 | YES |
miR394|a, b | UUGGCAUUCUGUCCACCUCC | 100% | 4 | 0 | YES |
miR396|a | UUCCACAGCUUUCUUGAACUG | 100% | 134 | 84 | YES |
miR396|b | UUCCACAGCUUUCUUGAACUU | 100% | 82 | 16 | YES |
miR397|a | UCAUUGAGUGCAGCGUUGAUG | 100% | 26 | 0 | YES |
miR408|a | AUGCACUGCCUCUUCCCUGGC | 100% | 14 | 1 | YES |
ath-miR2111a | UAAUCUGCAUCCUGAGGUUUA | 100% | 1 | 0 | YES |
peu-miR2910 | UAGUUGGUGGAGCGAUUUGUC | 100% | 8 | 0 | YES |
osa-miR167d | UGAAGCUGCCAGCAUGAUCUG | 100% | 3401 | 1 | YES |
tae-miR395b | UGAAGUGUUUGGGGGAACUC | 100% | 1 | 0 | YES |
bna-miR397a | CAUUGAGUGCAGCGUUGAUGU | 95% | 77 | 0 | YES |
miR156|h | UUGACAGAAGAGAGUGAGCAC | 95% | 91 | 0 | YES |
miR156|g | ACAGAAGAGAGUGAGCACA | 90% | 5 | 0 | YES |
miR169|d, e, f, g | UGAGCCAAGGAUGACUUGCCU | 95% | 130 | 0 | YES |
miR169|d, e, f, g | UGAGCCAAAGAUGACUUGCCU | 90% | 112 | 0 | YES |
miR399|a | UGCCAAAAGAGACUUGCCCUG | 95% | 3 | 0 | YES |
miR403|a | CUAGAUUCACGCACAAGCUCG | 90% | 1 | 0 | -- |