Table 5 miRNA targets identified in melon transcripts for potential ta-siRNAs derived from unigene c15d_05-D02-M13R_c
From: Analysis of the melon (Cucumis melo) small RNAome by high-throughput pyrosequencing
Melon sRNA name | sRNA sequence | Targeted unigene | Unigene sense | Score (miRanda) | Unigene annotation |
|---|---|---|---|---|---|
a11_156739_ | AGTTTGCTTCTTGGGCTCTTC | cA_05-B09-M13R_c | Forward | 175 | IAA16; transcription factor |
a11_156739_ | AGTTTGCTTCTTGGGCTCTTC | cPS_07-G03-M13R_c | Forward | 175 | IAA16; transcription factor |
a14_55988_ | AGAGCCCAAGAAGCAAACTGG | cCL678Contig1 | Forward | 172 | auxin efflux carrier family protein |
a24_92242_ | AGAGCCCAAGAAGCAAACTG | cCL678Contig1 | Forward | 172 | auxin efflux carrier family protein |
a33_151240_ | CAGTTTGCTTCTTGGGCTCTT | c15d_39-H01-M13R_c | Forward | 171 | ARF6 (AUXIN RESPONSE FACTOR 6); transcription factor |
a14_362833_ | CGATGGTGATGGGATTTTTGA | cCL1479Contig1 | Reverse | 171 | IAA9 (INDOLE-3-ACETIC ACID INDUCIBLE 9); transcription factor |
a14_362833_ | CGATGGTGATGGGATTTTTGA | cCL4756Contig1 | Reverse | 175 | ATAUX2-11 (AUXIN INDUCIBLE 2-11); DNA binding/transcription factor |
a14_362833_ | CGATGGTGATGGGATTTTTGA | cP5.72_c | Reverse | 175 | IAA7 (INDOLE-3-ACETIC ACID 7); transcription factor |
a33_203464_ | CATTTTTTACGATGGTGATGG | cCL3310Contig1 | Forward | 179 | ATUBP3 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 3) |
a14_362833_ | CGATGGTGATGGGATTTTTGA | cCL3310Contig1 | Forward | 175 | ATUBP3 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 3) |
a14_20904_ | TACGATGGTGATGGGATTTTT | cCL4210Contig1 | Forward | 174 | ubiquitin-associated (UBA)/TS-N domain-containing protein |
a11_156739_ | AGTTTGCTTCTTGGGCTCTTC | cCL1290Contig1 | Forward | 171 | binding/ubiquitin-protein ligase |