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Table 3 HLA calling accuracy and concordance with gold standard in 270 individuals

From: Next-generation sequencing for HLA typing of class I loci

Population Concordant alleles Original type missing Original type incorrect Incorrect call due to low coverage Incorrect due to other reasons Total Accuracy
CEU 457 66 6 10 1 540
(= 90 × 6)
97.7%
(463/474)
YRI 485 8 16 29 2 540
(= 90 × 6)
94.2%
(501/532)
JPT 246 6 9 5 4 270
(= 45 × 6)
96.6%
(255/264)
CHB 258 0 7 5 0 270
(= 45 × 6)
98.1%
(265/270)
Total 1446 80 38 49 7 1620 96.4%