Table 6 HLA alleles mistyped in 454 sequencing due to low or unbalanced coverage
From: Next-generation sequencing for HLA typing of class I loci
Population | HLA allele | # Miscalls | # Correct calls |
|---|---|---|---|
YRI/CEU | C*04:01 | 24 | 35 |
YRI | A*30:01 | 8 | 25 |
CHB | A*31:01 | 4 | 16 |
JPT/CHB | A*33:03 | 3 | 33 |
YRI | A*30:02 | 2 | 7 |
JPT | C*07:02 | 1 | 78 |
YRI | C*02:10 | 1 | 10 |
CHB | B*46:01 | 1 | 15 |
CEU | B*35:01 | 1 | 29 |
CEU | A*29:02 | 1 | 8 |
CEU | A*11:01 | 1 | 32 |