Genomic analysis and temperature-dependent transcriptome profiles of the rhizosphere originating strain Pseudomonas aeruginosa M18

Table 2 Divergence of virulence genes between P.aeruginosa LESB58 and M18.

Divergent virulence gene in LESB58^a	Gene symbol	Length (AA)	Similar gene in M18	Identity (%)	Match length/Query length
PALES_42341	flgL	439	PAM18_3957	67.58	1
PALES_42291	fliC	488	PAM18_3943	48.26	1
PALES_42281	flaG	123	PAM18_3942	60	0.61
PALES_42271	fliD	474	PAM18_3941	42.76	0.98
PALES_42261	fliS	126	PAM18_3939	66.39	0.97
PALES_42251	fliT	98	PAM18_3938	46.94	1
PALES_49071	pilA	154	PAM18_4617	71.61	1
PALES_29051	pvdE	550	PAM18_2644	57.71	1
PALES_29021	pvdE	550	PAM18_2644	57.71	1
PALES_28991	pvdE	550	PAM18_2644	57.71	1
PALES_28971	pvdD	4,096	PAM18_2640	57.21	1
PALES_28961	pvdJ	1,123	PAM18_2641	53.40	1
PALES_28681	pvdS	155	-^b	-	-
PALES_28981	fpvA	819	PAM18_0769	32.27	0.99
PALES_29011	fpvA	819	PAM18_0769	32.27	0.99
PALES_29041	fpvA	819	PAM18_2643	24.91	0.97
PALES_00751	ppkA	1,032	PAM18_0076	98.84	0.58
PALES_27241	lecA	122	PAM18_2466	100	0.45

^a Virulence genes in P. aeruginosa LESB58 were identified based on the VFDB database [51]. Divergent genes were identified by a BLASTP search under the expected level of 75% for identity or 0.7 for match length/query length.
^b "-" indicates no homologous was found in the M18 genome.

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