|
total reads
|
40,000,000
|
38,808,956
|
39,020,950
|
40,000,000
|
40,133,362
|
39,164,798
|
|
total unmapped reads
|
14,293,709
|
13,771,813
|
14,076,474
|
15,445,291
|
14,285,367
|
13,457,962
|
|
reads perfectly matched to the reference genome
|
16,867,579
|
17,398,322
|
12,737,195
|
15,882,824
|
17,575,361
|
13,920,553
|
|
reads with < = 2 bp mismatch to the reference genome
|
8,838,712
|
7,638,821
|
12,207,281
|
8,671,885
|
8,272,634
|
11,786,283
|
|
reads uniquely matched to the reference genome
|
22,908,741
|
22,998,328
|
23,301,854
|
21,235,855
|
23,695,323
|
23,823,564
|
|
reads matched to the reference genome with multi-positions
|
2,797,550
|
2,038,815
|
1,642,622
|
3,318,854
|
2,152,672
|
1,883,272
|
|
annotated genes identified in this study
|
19,062
|
17,382
|
15,612
|
18,695
|
17,447
|
15,716
|
|
reads uniquely matched to annotated genes
|
8,508,418
|
9,465,873
|
8,615,406
|
9,075,466
|
10,219,332
|
9,530,691
|
|
reads matched to annotated genes with multi-positions
|
10,648,618
|
15,009,898
|
13,906,877
|
10,839,003
|
15,072,157
|
13,441,905
|
|
novel transcript units
|
122,931
|
71,394
|
48,045
|
112,052
|
72,401
|
69,677
|
|
clustered transcriptionally active regions
|
29,499
|
22,871
|
17,085
|
25,842
|
21,840
|
22,099
|
|
alternative splicing genes
|
2882
|
1,851
|
1,859
|
2,832
|
2,116
|
1,657
|
|
5' extended genes
|
815
|
610
|
587
|
793
|
697
|
593
|
|
3' extended genes
|
1,201
|
1,375
|
1,075
|
1,360
|
1,224
|
1,064
|
|
Genes extended both 5' and 3' ends
|
672
|
551
|
432
|
636
|
590
|
411
|
