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Table 2 Comparisons of gene ontology (GO) terms of unigenes differentially transcribed in juvenile wood with contrasting stiffness and microfibril angle

From: Transcriptome profiling of Pinus radiata juvenile wood with contrasting stiffness identifies putative candidate genes involved in microfibril orientation and cell wall mechanics

GO No. GO Terms Class a HS b LS b P-value
GO:0030312 External encapsulating structure CC 0 15 0.028
GO:0016469 Proton-transporting two-sector ATPase complex CC 9 0 0.037
GO:0005774 Vacuolar membrane CC 16 2 0.034
GO:0003779 Actin binding MF 9 0 0.037
GO:0022804 Active transmembrane transporter activity MF 32 11 0.041
GO:0016835 Carbon-oxygen lyase activity MF 0 13 0.042
GO:0050662 Coenzyme binding MF 0 20 0.013
GO:0005507 Copper ion binding MF 9 0 0.037
GO:0020037 Heme binding MF 16 2 0.034
GO:0004497 Monooxygenase activity MF 9 0 0.037
GO:0004673 Protein histidine kinase activity MF 9 0 0.037
GO:0046906 Tetrapyrrole binding MF 16 2 0.034
GO:0046914 Transition metal ion binding MF 68 35 0.048
GO:0003746 Translation elongation factor activity MF 13 0 0.016
GO:0000155 Two-component sensor activity MF 9 0 0.037
GO:0019752 Carboxylic acid metabolic process BP 19 47 0.050
GO:0006812 Cation transport BP 29 8 0.037
GO:0042180 Cellular ketone metabolic process BP 19 47 0.050
GO:0044255 Cellular lipid metabolic process BP 3 33 0.005
GO:0032502 Developmental process BP 13 42 0.023
GO:0022900 Electron transport chain BP 16 2 0.034
GO:0006631 Fatty acid metabolic process BP 0 17 0.019
GO:0006811 Ion transport BP 29 8 0.037
GO:0032787 Monocarboxylic acid metabolic process BP 0 26 0.004
GO:0034470 ncRNA processing BP 0 15 0.028
GO:0006082 Organic acid metabolic process BP 19 47 0.050
GO:0009651 Response to salt stress BP 19 4 0.049
GO:0050896 Response to stimulus BP 91 51 0.040
GO:0006950 Response to stress BP 68 33 0.032
GO:0009260 Ribonucleotide biosynthetic process BP 19 4 0.049
GO:0006396 RNA processing BP 3 26 0.015
GO:0006414 Translational elongation BP 13 0 0.016
  1. aCC: cellular component; MF: molecular function; BP: biological process. bHS: wood with high stiffness and low microfibril angle; LS: wood with low stiffness and high microfibril angle; The number of GO terms assigned in the identified unigenes was normalized at 1, 000 unigenes.