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Table 3 Putative candidate genes with known functions preferentially transcribed in juvenile wood with high stiffness and low microfibril angle

From: Transcriptome profiling of Pinus radiata juvenile wood with contrasting stiffness identifies putative candidate genes involved in microfibril orientation and cell wall mechanics

Candidate genes GenBank Accession a Flynn-EW b Flynn-LW b Kromelite- LW b Mean ratio Mean P-value
Actin depolymerizing factor FE521693 1.74 (0.048) 1.82 (0.051) 1.93 (0.042) 1.83 0.047
C4H FE519540 1.64 (0.047) 1.71 (0.021) 1.40 (0.014) 1.59 0.027
Elicitor inducible beta-1, 3-glucanase FE518343 2.18 (0.050) 1.71 (0.049) 1.38 (0.042) 1.76 0.047
Phytochrome FE524197 1.70 (0.010) 1.58 (0.027) 1.40 (0.037) 1.56 0.025
Tubulin beta-3 FE519523 1.74 (0.048) 1.58 (0.050) 1.62 (0.014) 1.65 0.037
Actin FE518593   1.52 (0.037) 1.32 (0.012) 1.42 0.025
ADP ATP carrier protein FE519476   1.76 (0.048) 1.47 (0.035) 1.61 0.042
Alpha/beta hydrolase FE524486   1.32 (0.043) 1.34 (0.053) 1.33 0.048
C3H FE520787   1.41 (0.044) 1.51 (0.036) 1.46 0.040
CAD FE520918   1.49 (0.048) 1.34 (0.051) 1.42 0.050
Chaperone GrpE type 1 FE523866 1.46 (0.049)   1.46 (0.051) 1.45 0.050
Chloroplast DnaJ-like 2 FE522001   1.48 (0.046) 1.61 (0.050) 1.54 0.048
Cytochrome b5 FE519722   1.39 (0.047) 1.41 (0.039) 1.40 0.043
Cytokinin-binding protein FE518619   1.41 (0.047) 1.57 (0.041) 1.49 0.044
D-cysteine desulfhydrase FE523039   1.34 (0.042) 1.31 (0.052) 1.32 0.047
Defender against apoptotic death 1 FE523621   1.41 (0.039) 1.36 (0.053) 1.39 0.046
eIF-2-gamma FE521528   1.41 (0.038) 1.40 (0.050) 1.41 0.044
Hin1 containing protein FE518865   1.45 (0.045) 1.55 (0.028) 1.50 0.037
Light-inducible protein FE523148   1.51 (0.040) 1.65 (0.050) 1.58 0.045
PCBER FE523120   1.33 (0.036) 1.32 (0.027) 1.33 0.032
PrCesA1 FE521029   1.51 (0.054) 1.46 (0.012) 1.49 0.033
PrCesA11 FE524308   1.76 (0.051) 1.47 (0.047) 1.61 0.049
PrCesA3 FE520377   1.44 (0.049) 1.49 (0.046) 1.47 0.048
PrCesA7 FE518578 2.41 (0.045) 1.40 (0.033)   1.91 0.044
SDL-1 protein FE523204 1.44 (0.050) 1.34 (0.002)   1.39 0.025
Sucrose synthase FE519487   1.38 (0.054) 1.31 (0.045) 1.35 0.050
Vacuolar ATPase subunit FE520935   1.39 (0.016) 1.47 (0.051) 1.43 0.034
Vignain precursor FE522061   1.42 (0.008) 1.88 (0.037) 1.65 0.023
Zinc finger, C2H2-type FE522289   1.31 (0.038) 1.49 (0.039) 1.40 0.039
  1. aGenBank accession number for the representing EST of each gene.bThree microarray experiments: Flynn-EW (earlywood in Flynn, spring), Flynn-LW (latewood in Flynn, autumn) and Kromelite-LW (latewood in Kromelite, summer). Gene expression ratios with (P-values) are presented.