Skip to main content

Table 3 Putative candidate genes with known functions preferentially transcribed in juvenile wood with high stiffness and low microfibril angle

From: Transcriptome profiling of Pinus radiata juvenile wood with contrasting stiffness identifies putative candidate genes involved in microfibril orientation and cell wall mechanics

Candidate genes

GenBank Accession a

Flynn-EW b

Flynn-LW b

Kromelite- LW b

Mean ratio

Mean P-value

Actin depolymerizing factor

FE521693

1.74 (0.048)

1.82 (0.051)

1.93 (0.042)

1.83

0.047

C4H

FE519540

1.64 (0.047)

1.71 (0.021)

1.40 (0.014)

1.59

0.027

Elicitor inducible beta-1, 3-glucanase

FE518343

2.18 (0.050)

1.71 (0.049)

1.38 (0.042)

1.76

0.047

Phytochrome

FE524197

1.70 (0.010)

1.58 (0.027)

1.40 (0.037)

1.56

0.025

Tubulin beta-3

FE519523

1.74 (0.048)

1.58 (0.050)

1.62 (0.014)

1.65

0.037

Actin

FE518593

 

1.52 (0.037)

1.32 (0.012)

1.42

0.025

ADP ATP carrier protein

FE519476

 

1.76 (0.048)

1.47 (0.035)

1.61

0.042

Alpha/beta hydrolase

FE524486

 

1.32 (0.043)

1.34 (0.053)

1.33

0.048

C3H

FE520787

 

1.41 (0.044)

1.51 (0.036)

1.46

0.040

CAD

FE520918

 

1.49 (0.048)

1.34 (0.051)

1.42

0.050

Chaperone GrpE type 1

FE523866

1.46 (0.049)

 

1.46 (0.051)

1.45

0.050

Chloroplast DnaJ-like 2

FE522001

 

1.48 (0.046)

1.61 (0.050)

1.54

0.048

Cytochrome b5

FE519722

 

1.39 (0.047)

1.41 (0.039)

1.40

0.043

Cytokinin-binding protein

FE518619

 

1.41 (0.047)

1.57 (0.041)

1.49

0.044

D-cysteine desulfhydrase

FE523039

 

1.34 (0.042)

1.31 (0.052)

1.32

0.047

Defender against apoptotic death 1

FE523621

 

1.41 (0.039)

1.36 (0.053)

1.39

0.046

eIF-2-gamma

FE521528

 

1.41 (0.038)

1.40 (0.050)

1.41

0.044

Hin1 containing protein

FE518865

 

1.45 (0.045)

1.55 (0.028)

1.50

0.037

Light-inducible protein

FE523148

 

1.51 (0.040)

1.65 (0.050)

1.58

0.045

PCBER

FE523120

 

1.33 (0.036)

1.32 (0.027)

1.33

0.032

PrCesA1

FE521029

 

1.51 (0.054)

1.46 (0.012)

1.49

0.033

PrCesA11

FE524308

 

1.76 (0.051)

1.47 (0.047)

1.61

0.049

PrCesA3

FE520377

 

1.44 (0.049)

1.49 (0.046)

1.47

0.048

PrCesA7

FE518578

2.41 (0.045)

1.40 (0.033)

 

1.91

0.044

SDL-1 protein

FE523204

1.44 (0.050)

1.34 (0.002)

 

1.39

0.025

Sucrose synthase

FE519487

 

1.38 (0.054)

1.31 (0.045)

1.35

0.050

Vacuolar ATPase subunit

FE520935

 

1.39 (0.016)

1.47 (0.051)

1.43

0.034

Vignain precursor

FE522061

 

1.42 (0.008)

1.88 (0.037)

1.65

0.023

Zinc finger, C2H2-type

FE522289

 

1.31 (0.038)

1.49 (0.039)

1.40

0.039

  1. aGenBank accession number for the representing EST of each gene.bThree microarray experiments: Flynn-EW (earlywood in Flynn, spring), Flynn-LW (latewood in Flynn, autumn) and Kromelite-LW (latewood in Kromelite, summer). Gene expression ratios with (P-values) are presented.
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us