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Table 1 Comparison of the ratios of transcript levels between WT and GPC-RNAi in the Illumina (12 DAA) and qRT-PCR experiments (12 DAA and 22 DAA).

From: Effect of the down-regulation of the high Grain Protein Content (GPC) genes on the wheat transcriptome during monocarpic senescence

   qRT-PCR a
   12 DAA 22 DAA
Isogroup Illumina ratio Ratio P ratio P
Isogroup10136 8.745 4.976 0.004 6.472 0
Isogroup08662 5.887 2.11 0.018 2.021 0.001
Isogroup14133 3.303 0.983 0.955 1.208 0.78
Isogroup10811 3.226 2.183 0.034 4.795 0.005
Isogroup12718 2.917 1.67 0.189 1.8 0.018
Isogroup06043 2.797 1.761 0.04 2.088 0.045
Isogroup02905 b 2.292 1.349 0.192 2.8 0.008
Isogroup03083 b 2.218 0.839 0.638 1.904 0.108
Isogroup10053 b 2.19 1.017 0.92 1.094 0.572
Isogroup01211 b 2.052 0.806 0.506 1.582 0.119
Isogroup11278 b 0.471 0.764 0.18 0.726 0.114
Isogroup05843 b 0.448 0.852 0.316 0.827 0.068
Isogroup03470 b 0.445 0.863 0.271 0.845 0.063
Isogroup13287 b 0.422 1.012 0.942 0.853 0.427
Isogroup13088 0.393 0.698 0.050 0.843 0.492
Isogroup06482 0.365 0.916 0.461 0.924 0.605
Isogroup10940 0.333 0.739 0.018 0.631 0.917
Isogroup10620 0.272 0.716 0.029 1.068 0.732
Isogroup13722 0.267 0.606 0.005 0.522 0.336
Isogroup07898 0.254 0.97 0.816 0.882 0.325
Isogroup06574 0.237 0.973 0.782 0.759 0.063
Isogroup07736 0.199 0.62 0.015 0.975 0.912
  1. a Ratios presented as expression in WT/expression GPC-RNAi determined by Illumina counts and qRT-PCR. Ratios higher than one indicate genes up-regulated by senescence and ratios lower than one genes down-regulated by senescence. b Isogroups with less than 2.5 fold changes.