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Table 1 Polymorphism nucleic and amino acid site detection for 7 putative CRN observed on four P.halstedii races (100, 304, 703, and 710)

From: Transcriptomic analysis of the interaction between Helianthus annuus and its obligate parasite Plasmopara halstedii shows single nucleotide polymorphisms in CRN sequences

Cluster Motif Motif position Aminoacid polymorphism Aminoacid position Nucleic acid polymorphism SNP position
PhCRN_01 LRLFLAK 58 V/A 131 T/C 394
    Synonymous T/C 440
    E/G 261 A/G 784
    I/F 264 A/T 792
    E/D 281 A/T 845
    M/V 441 A/G 1323
PhCRN_03 LELSLAK 56 R/K 373 A/G 1122
PhCRN_04 LELSLAK 58 Synonymous C/T 1781
    Synonymous A/G 1937
    T/L* 508 A/C 1953
      C/T 1954
    L/I* 519 C/A 1986
    Synonymous A/G 2060
    A/D 558 C/A 2104
    L/P 568 T/C 2133
      T/C 2134
PhCRN_05 LQLFLAK 57 G/K 37 G/A 131
      G/A 132
    Synonymous G/T 823
    Synonymous A/T 946
    Synonymous T/A 948
PhCRN_06 IELFLSK 59 Synonymous T/C 1705
    Synonymous G/A 1706
    Synonymous C/T 1712
    Synonymous G/A 1714
    Synonymous G/A 1720
    I/T 505 T/C 1722
    E/K 506 G/A 1724
    L/T 508 C/A 1730
      T/C 1731
    L/I 519 C/A 1763
    Synonymous C/T 1816
    Synonymous A/G 1837
    G/C 555 G/T 1871
    A/E 558 C/A 1881
    A/T 561 G/A 1889
    Synonymous A/G 1900
    I/F 578 A/T 1940
    A/V 579 C/T 1944
    Synonymous A/G 1975
PhCRN_07 LKLSLAK 56 N/S 188 A/G 565
    L/W 258 T/G 775
    Synonymous T/C 1025
PhCRN_09 LELSLAK 50 Synonymous G/T 943
    Synonymous A/G 1084
  1. *: polymorphism within the race 710 only