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Table 5 Genes involved in the main physiological processes regulated by dietary treatments.

From: Effects of the total replacement of fish-based diet with plant-based diet on the hepatic transcriptome of two European sea bass (Dicentrarchus labrax) half-sibfamilies showing different growth rates with the plant-based diet

Physiological process

Swiss prot description

Gene name

Fold-change (FC)

Lipid metabolism and transport

Fatty acid desaturase 2

FADS2

4.9

 

Stearoyl-CoA 9-desaturase

SCD9

1.4

 

NADH-cytochrome b5 reductase 2

CYB5R2

2.0

 

1-acyl-sn-glycerol-3-phosphate acyltransferase gamma

AGPAT3

2.3

 

Phosphatidylserine decarboxylase proenzyme

PISD

2.8

 

Phosphatidylinositol-glycan biosynthesis class F protein

PIGF

1.6

 

Isopentenyl-diphosphate Delta-isomerase 1

IDI1

2.0

 

Lanosterol 14-alpha demethylase

CYP51A1

3.6

 

Farnesyl pyrophosphate synthase

FDPS

2.6

 

C-4 methylsterol oxidase

SC4MOL

2.6

 

3-hydroxy-3-methylglutaryl-coenzyme A reductase

HMGCR

4.4

 

Apolipoprotein A-I

APOA1

1.3

 

Apolipoprotein B-100

APOB100

1.5

 

Lipoprotein lipase

LPL

3.1

 

Angiopoietin-related protein 3

ANGPTL3

0.3

 

Phosphatidylcholine-sterol acyltransferase

LCAT

1.9

Carbohydrate metabolism

Glucose-6-phosphate 1-dehydrogenase

G6PDH

1.3

 

Hexose-6-phosphate 1-dehydrogenase

H6PDH

1.2

 

6-phosphogluconate dehydrogenase

PGD

1.5

 

Fructose-1, 6-bisphosphatase 1

FBP1

2.3

 

Fructose-bisphosphate aldolase A

ALDOA

2.7

 

Fructose-bisphosphate aldolase B

ALDOB

2.3

Protein metabolism

Proteasome subunit alpha type-4

PSMA

1.2

 

Proteasome subunit beta type-7

PSMB7

1.3

 

26S protease regulatory subunit 7

PSMC2

1.3

 

26S proteasome non-ATPase regulatory subunit 4

PSMD4

1.5

 

Ubiquitin-associated protein 1

UBAP1

1.8

 

Ubiquitin-conjugating enzyme E2 A

UBE2A

1.9

 

Ubiquitin-conjugating enzyme E2 G1

UBE2G1

1.7

 

Ubiquitin-conjugating enzyme E2 N

UBE2N

1.2

Amino acid metabolism

CTP synthase 1

CTPS

1.7

 

Glutamine amidotransferase

GMPS

1.8

 

Alpha-aminoadipate aminotransferase

AADAT

1.7

 

Glutamate oxaloacetate transaminase 1

GOT1

4.4

 

Tyrosine aminotransferase

TAT

2.6

 

Succinate dehydrogenase iron-sulfur subunit

SDHB

1.4

 

Isocitrate dehydrogenase subunit gamma

IDH3g

1.3

 

Malate dehydrogenase

MDH

2.5

Immune function

Interleukin-8

IL8

0.5

 

C-X-C motif chemokine 10

CXCL10

0.5

 

C-reactive protein

CRP

0.5

 

Lysozyme g like protein

LYG

0.7

 

Integrin beta-2

ITGB2

0.6

 

Receptor-type tyrosine-protein phosphatase F

PTPRF

0.5

 

Prostaglandin synthase 2

PTGS2

0.6

 

Fatty acid-binding protein

FABP7

4.5

 

Plasma protease C1 inhibitor

SERPING1

1.3

 

Prostaglandin D2 synthase 2

PTGS3

0.6

Cell communication

Cytokine receptor common subunit gamma

IL2RG

0.5

 

protein tyrosine phosphatase, receptor type, F

PTPRF

0.5

 

Integrin beta-2

ITGB2

0.6

Blood coagulation

Antithrombin-III

SERPINC1

1.9

 

Plasma protease C1 inhibitor

SERPING1

1.3

 

Vitamin K-dependent protein S

PROS1

1.4

 

Plasminogen

PLG

1.4

 

Platelet glycoprotein 4

CD36

2.2

 

Coagulation factor X

F10

1.3

 

Prothrombin

F2

1.2

 

Coagulation factor VII

F7

1.5

 

Fibrinogen beta chain

FGB

1.3

 

Fibrinogen gamma chain

FGG

1.3

  1. The fold-changes (FC) are indicated considering FD as the reference group. (two-way ANOVA, P < 0.01).
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BMC Genomics

ISSN: 1471-2164

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