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Table 2 Summary of reference assembly of expressed short reads of channel catfish and blue catfish

From: Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array

Catfish species No. of reads used
for assembly
No. of reads
assembled
% sequences
assembled
No. of contigs Average contig
length (bp)
Average contig
size*
Average coverage#
Channel 218.8 × 106 152.6 × 106 69.8% 103,650 670 1,473 137.4
Blue 274.6 × 106 183.8 × 106 66.7% 104,475 775 1,760 164.2
  1. *Number of reads per contig. #Total number of assembled read bases/Total number of bases in consensus sequence.
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