Skip to main content

Table 7 Quality SNPs selected from the putative SNPs with a set of criteria as described in the Methods section

From: Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array

  Intra-specific SNPs Inter-specific SNPs3
  Channel catfish1 Blue catfish2  
Total SNPs 342,104 366,269 420,727
   Transitions 208,517 230,031 262,048
   Transversions 133,587 136,238 158,679
No. of contigs with SNPs 168,458 190,197 232,972
No. of contigs with Uniprot hits & SNPs 28,067 30,376 32,515
No. of unique known genes containing SNPs 16,562 17,423 18,085
  1. 1SNPs identified at positions where there were SNPs within channel catfish; 2SNPs identified at positions where there were SNPs within blue catfish; 3SNPs identified at positions where there were no intra-specific channel catfish SNPs or intra-specific blue catfish SNPs, but the bases differed between the two species.
\