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Table 8 Summary of microsatellite markers identification from the all catfish expressed short reads assembly

From: Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array

Number of contigs of sequences surveyed 526,099
Number of contigs containing microsatellites 49,883
Total number of microsatellites identified 57,379
   Di-nucleotide repeats 31,657
   Tri-nucleotide repeats 16,925
   Tetra-nucleotide repeats 8,235
   Penta-nucleotide repeats 506
   Hexa-nucleotide repeats 56
Number of microsatellites with sufficient flanking sequences 39,516
Number of contigs containing microsatellites with sufficient flanking sequences 34,539