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Table 1 Tandem repeats in mouse WGS assemblies

From: Tandemly repeated DNA families in the mouse genome

Assembly

GPID

Size (bp)

Contigs

TR

(all)

% of

assembly

TR

(> 3 kb)

MGSC WGS

13183

2,477,633,597

224,713

849,466

2.9%

157

Celera WGS

11785

3,003,109,157

837,963

1,084,552

5.0%

784

Total WGS

 

5,480,742,754

1,062,676

1,934,018

3.8%

941

  1. GPID - NCBI Genome Project ID. TR (all) - total amount found in assembly; MGSC - the mouse genome sequencing consortium.
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BMC Genomics

ISSN: 1471-2164

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