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Table 4 Putative phase variable genes of Helicobacter bizzozeronii CIII-1

From: Comparative Genomics of Helicobacter pylori and the human-derived Helicobacter bizzozeronii CIII-1 strain reveal the molecular basis of the zoonotic nature of non-pylori gastric Helicobacter infections in humans

  Repeat unit Length(bp) Region Localization1 CDS Locus_Tag2 Predicted function
Glycan biosynthesis
  C 20 1,090,089..1,090,108 5' HBZC1_11830 Alpfa(1,3)-Fucosyltransferase (glycosyltransferase Family GT10)
  C 19 448,597..448,615 M HBZC1_04780/HBZC1_04770/HBZC1_04760 Putative Beta-Galactosyltransferase (glycosyltransferase Family GT25)
  C 19 449,444..449,462 5' HBZC1_04800/HBZC1_04790 Putative Beta-Galactosyltransferase (glycosyltransferase Family GT25)
  C 14 237,793..237,806 5' HBZC1_02530/HBZC1_02540 UDP-N-acetylglucosamine 2-epimerase
  G 13 339,856..339,872 M HBZC1_03690/HBZC1_03680 Glycosyltransferase Family GT4
  CT 13 1,310,060..1,310,085 M HBZC1_14140 Glycosyltransferase Family GT4
  CACACAA 13 706,715..706,800 M HBZC1_07440 Glycosyltransferase Family GT4
Cell-surface-associated proteins
  G 15 478,890..478,904 5' HBZC1_05060 Hypothetical protein (putative HcpA)
  G 10 732,027..732,038 M HBZC1_07730/HBZC1_07740 CBS domains containing protein (homologue of HP1490 - TolC efflux pump)
  G 15 1,677,616..1,677,630 5' HBZC1_18160 Putative ATP/GTP binding protein
  G 9 58,965..58,973 5' HBZC1_00570 Massive surface protein (MspC)
  G 9 640,616..640,624 M HBZC1_06770 Outer membrane protein
  C 9 809,713..809,721 M HBZC1_08590/HBZC1_08580 Outer membrane protein (omp30)
  A 9 1,401,250..1,401,258 5' HBZC1_15140/HBZC1_15150 Outer membrane protein
  C 9 666,243..666,252 M HBZC1_06970 Putative paralog of HpaA
  C 9 880,014..880,022 5' HBZC1_09290 Hypothetical protein
  T 9 167,433..167,441 M HBZC1_01860 Cardiolipin synthetase (phosholipase D)
  C 9 1,364,186..1,364,194 5' HBZC1_14770 Rare lipoprotein A precursor
  C 9 611,706..611,714 5' HBZC1_06460 Methyl-accepting chemotaxis protein
  G 9 831,049..831,057 5' HBZC1_08750/HBZC1_08760 Flagellar assembly protein FliH
  A 9 813,507..813,515 5' HBZC1_08620 Flagellar hook-length control protein FliK
  C 9 1,380,513..1,380,521 M HBZC1_14960 Hypothetical protein (probable membrane protein)
  G 9 1,581,243..1,581,251 5' HBZC1_17050 Omp
  AG 8 516,821..516,838 M HBZC1_05450/HBZC1_05460 Membrane protein containing sulfatase domain
  TC 6 1,716,985..1,716,996 M HBZC1_18530 Membrane protein containing sulfatase domain
  CAGCA 14 1,532,941..1,533,010 5' HBZC1_16470 HopZ
Restriction/Modification system
  AC 20 823,472..823,513 3' HBZC1_08670/HBZC1_08280 Type I restriction-modification system, DNA-methyltransferase subunit M and S
Stress associated proteins
  C 9 204,956..204,964 M HBZC1_02170 Cold-shock DEAD-box protein A
  G 10 1,343,484..1,343,493 M HBZC1_14490 Putative periplasmic protein contains a protein prenylyltransferase domain
Other proteins
  G 9 886,063..886,071 M HBZC1_09350/HBZC1_09360 Hypothetical protein (homolog of putative heterodisulfide reductase H. suis)
  G 17 981,720..981,736 M HBZC1_10620/HBZC1_10630 Hypothetical protein (Sel1 domain-containing protein)
  C 16 1,314,541..1,314,556 5' HBZC1_14170/HBZC1_14180 Hypothetical protein
  G 9 177,594..177,602 M HBZC1_01940 Hypothetical protein
  C 10 372,167..372,176 5' HBZC1_04030 Hypothetical protein
  A 9 571,554..571,562 5' HBZC1_06030 Hypothetical protein
  C 13 886,063..886,071 M HBZC1_10080 Hypothetical protein
  C 17 986,120..986,136 M HBZC1_10650 Hypothetical protein
  G 9 1,135,720..1,135,728 5' HBZC1_12200 Cytidine monophosphate-N-acetylneuraminic acid contains Rieske domain
  C 14 1,235,708..1,235,721 5' HBZC1_13300 Hypothetical protein
  C 9 1,380,536..1,380,544 M HBZC1_14960 Hypothetical protein
  G 10 1,458,356..1,458,364 M HBZC1_15990 Hypothetical protein
  G 9 1,571,406..1,571,414 M HBZC1_16940 Hypothetical protein
  G 13 1,659,328..1,659,340 5' HBZC1_17930 Hypothetical protein (contains LexA/Signal peptidase domain)
  1. 1localization of the SSR in the 5' terminal part (5'), 3' terminal part (3') or in the middle (M) of the corresponding CDS
  2. 2when modifying the repeat length allows to merge two or more adjacent CDSs, the respective locus tags are indicated in the table separated by a slash