Extensive recombination events and horizontal gene transfer shaped the Legionella pneumophila genomes

Gomez-Valero, Laura; Rusniok, Christophe; Jarraud, Sophie; Vacherie, Benoit; Rouy, Zoé; Barbe, Valerie; Medigue, Claudine; Etienne, Jerome; Buchrieser, Carmen

doi:10.1186/1471-2164-12-536

BMC Genomics

Table 3 Orthologous proteins with eukaryotic motifs present in the 6 L. pneumophila strains and in L. longbeachae

From: Extensive recombination events and horizontal gene transfer shaped the Legionella pneumophila genomes

Motif	L. pneumophila strains												L. lo
	Paris		Lens		Philadelphia		Lorraine		HL06041035		Corby
ANK	lpp0037	96.30	lpl0038	97.40	lpg0038*	97.04	lpo0042	97.89	lpv0043	93.66	lpc0039	97.10
ANK	lpp0126	98.94	lpl0111	98.48	lpg0112	94.83	lpo0119	98.79	lpv0127	93.03	lpc0131	92.16	llo1394
ANK	lpp0202
ANK	lpp0356
ANK	lpp0469	98.94	lpl0445	96.35	lpg0403*	95.53	lpo0463	97.64	lpv0501	98.48	lpc2941	98.67
ANK	lpp0503	98.37	lpl0479	93.86	lpg0436*	93.31	lpo0501	98.12	lpv0537	98.37	lpc2906	98.37
ANK	lpp0547	99.50	lpl0523	96.31	lpg0483*	96.82	lpo0551	99.83	lpv0585	98.16	lpc2861	99.16	llo2705
ANK	lpp0750	100.00	lpl0732	97.65	lpg0695*	100.00	lpo0775	99.84	lpv0817	100.00	lpc2599	98.44
ANK	lpp1100
ANK + SET	lpp1683	97.68	lpl1682	96.32	lpg1718*	98.41	lpo1757	97.86	lpv1985	96.91	lpc1152	97.25
ANK	lpp1905
ANK	lpp2058	99.20	lpl2048	90.42			lpo2181	98.05			lpc1566	98.80
ANK	lpp2061	99.60	lpl2051	95.95			lpo2185	95.38			lpc1569	96.80
ANK	lpp2065	99.93	lpl2055	98.56			lpo2189	98.62			lpc1573	98.03
ANK + Fbox	lpp2082	97.40	lpl2072	98.26	lpg2144*	98.84	lpo2207	99.03	lpv2392	93.99	lpc1593	99.22
ANK	lpp2166	99.25	lpl2140	99.12	lpg2215*	99.06	lpo2285	97.74	lpv2469	99.18	lpc1680	98.93
ANK	lpp2248	99.50	lpl2219	99.14	lpg2300*	99.14	lpo2371	99.43	lpv2567	98.93	lpc1765	99.21	llo0584
ANK	lpp2270	99.64	lpl2242	97.97	lpg2322*	98.34	lpo2399	98.08	lpv2591	99.53	lpc1789	99.53	llo0570
ANK	lpp2517	99.60	lpl2370	97.94	lpg2452*	98.19	lpo2642	98.95	lpv2776	99.46	lpc2026	99.46
ANK	lpp2522	98.76	lpl2375	96.90	lpg2456*	95.75	lpo2647	98.49	lpv2781	98.76	lpc2020	91.27	llo0365
ANK	plpp0098	96.00					lpop0045	96.00
ANK			lpl1681	100.00							lpc1151	97.98
ANK			lpl2058	86.17			lpo2193	95.37	lpv2375	94.96
ANK			lpl2339	98.64	lpg2416*	91.21	lpo2601	99.00	lpv2736	99.28	lpc2057	98.98
ANK					lpg0402*	100.00			lpv0500	96.01
ANK									lpv2258
ANK			lpl1681	100.00							lpc1151	97.98
ANK			lpl2344	100.00			lpo2607	97.93
F-Box	lpp0233	98.58	lpl0234	93.97	lpg0171*	96.81	lpo0202	97.87	lpv0254	98.94
F-Box	lpp2486
F-Box					lpg2224*	99.83			lpv2482	79.24
F-Box									lpv2481
RAS GEF	lpp0350	94.53	lpl0328	96.32	lpg0276*	97.33	lpo0327	97.64	lpv0368	97.64	lpc0353		llo0327
RAS GEF§									lpv2258
Sec7	lpp1932	98.41	lpl1919	97.40	lpg1950*	92.16	lpo2033	98.32	lpv2243	98.58	lpc1423	97.57	llo1397
Sel1											lpc0165
Sel1			lpl1059	100.00	lpg1062	99.61			lpv1209	100.00	lpc2212	99.61
Sel-1§	lpp0957	98.93	lpl0927	98.67	lpg0896	98.93	lpo0978	98.67	lpv1030	98.67	lpc2397	99.47	llo0844
Sel-1	lpp1174	99.39	lpl1180	98.30	lpg1172	98.32	lpo1187	99.11	lpv1327	99.39	lpc0638	99.05
Sel-1	lpp1310	97.87	lpl1307	98.40	lpg1356	98.67	lpo1345	99.02	lpv1469	97.87	lpc0770	98.76	llo1443
Sel-1	lpp2174	99.64	lpl2147	98.48	lpg2222*	99.56	lpo2292	99.47	lpv2477	99.47	lpc1689	96.27
Sel-1	lpp2692	99.25	lpl2564	98.61	lpg2639	98.39	lpo2917	99.28	lpv2979	99.39	lpc0501	98.75	llo2649
Sel-1							lpo3233
Spectrin	lpp1848§	99.18	lpl1845	98.77	lpg1884*	99.01	lpo1944§	98.93	lpv2158§	99.18	lpc1331	99.18
Spectrin	lpp2246	99.29	lpl2217	98.75	lpg2298*	99.29	lpo2369	99.29	lpv2565	98.27	lpc1763	98.75	llo1707
Spectrin	lpp1930	95.11			lpg1947*	96.65	lpo2029	97.72
Spectrin	lpp1309	100.00			lpg1355*	90.59			lpv1468	100.00
Spectrin ^§	lpp1002	98.01	lpl0971	91.62	lpg0940*	97.92	lpo1024	98.05	lpv1077	97.87	lpc2349	97.15
Spectrin §	lpp0471	97.79	lpl0447	97.45	lpg0405*	98.30	lpo0465§	98.28	lpv0504	98.28	lpc2939	97.70	llo2845
Spectrin §	lpp1843	95.45	lpl1840	97.57					lpv2151	100.00	lpc1323§	99.60
Spectrin §	lpp1173	98.56	lpl1179§	98.80	lpg1171§*	98.56	lpo1186	99.28	lpv1326	98.56	lpc0637	97.84	llo3114
STPK	lpp0267	96.95	lpl0262	98.72	lpg0208	93.26	lpo0242	98.92	lpv0288	95.13	lpc0283	97.26
STPK	lpp1439	99.12	lpl1545	98.11	lpg1483*	97.67	lpo1483	98.93	lpv1609	99.12	lpc0898	97.61	llo1682
STPK	lpp2626	94.88	lpl2481	98.85	lpg2556*	99.13	lpo2765	98.70	lpv2900	99.13	lpc1906	95.31	llo2218
U-box	lpp2887	99.72			lpg2830*	97.15	lpo3124	99.58	lpv3185	98.75

*Substrates of the Dot/Icm secretion system according to previous publications; ^¶ orthologs proteins where the corresponding motif was not present in the other genome; ^§ eukaryotic like proteins newly identified in this study; numbers, nucleotide identity with respect to the L. pneumophila Philadelphia gene; L.lo, Legionella longbeachae

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ISSN: 1471-2164

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