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Table 4 Comparison of microarray and qRT-PCR results for selected genes

From: HMGA1 drives stem cell, inflammatory pathway, and cell cycle progression genes during lymphoid tumorigenesis

Early/2 months Microarray qRT-PCR
Gene Symbol Fold-change Fold-change p-value
Cxcr3 1.534 1.604 7.13E-05
Eomes 1.460 1.610 1.29E-02
FoxP1 -1.326 -1.512 3.30E-04
Gzmm 4.297 11.452 5.41E-06
IL18r1 1.399 2.096 2.15E-03
IL2rb 1.566 1.415 6.03E-03
Late/12 months Microarray qRT-PCR
Gene Symbol Fold-change Fold-change p-value
Bub1b 1.618 1.423 3.82E-07
CD8b1 2.541 1.889 2.76E-02
Eomes 2.327 2.073 1.28E-02
FoxP1 -2.593 -2.045 9.80E-05
Gzmm 10.424 24.514 8.60E-03
IL18r1 2.085 2.042 2.88E-02
IL2rb 1.821 1.516 3.61E-02
  1. A subset of genes identified as differentially expressed by microarray analysis were validated by qRT-PCR at both the early and late time points. The fold-change found by microarray and qRT-PCR were similar for all genes assessed by qRT-PCR.