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Table 4 Comparison of microarray and qRT-PCR results for selected genes

From: HMGA1 drives stem cell, inflammatory pathway, and cell cycle progression genes during lymphoid tumorigenesis

Early/2 months

Microarray

qRT-PCR

Gene Symbol

Fold-change

Fold-change

p-value

Cxcr3

1.534

1.604

7.13E-05

Eomes

1.460

1.610

1.29E-02

FoxP1

-1.326

-1.512

3.30E-04

Gzmm

4.297

11.452

5.41E-06

IL18r1

1.399

2.096

2.15E-03

IL2rb

1.566

1.415

6.03E-03

Late/12 months

Microarray

qRT-PCR

Gene Symbol

Fold-change

Fold-change

p-value

Bub1b

1.618

1.423

3.82E-07

CD8b1

2.541

1.889

2.76E-02

Eomes

2.327

2.073

1.28E-02

FoxP1

-2.593

-2.045

9.80E-05

Gzmm

10.424

24.514

8.60E-03

IL18r1

2.085

2.042

2.88E-02

IL2rb

1.821

1.516

3.61E-02

  1. A subset of genes identified as differentially expressed by microarray analysis were validated by qRT-PCR at both the early and late time points. The fold-change found by microarray and qRT-PCR were similar for all genes assessed by qRT-PCR.
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BMC Genomics

ISSN: 1471-2164

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