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Table 2 Transcripts assembly

From: Exploring the gonad transcriptome of two extreme male pigs with RNA-seq

  = C e i j o p u Total
Large White 2178 22243 11328 67989 5557 3866 6775 72288 192224
(%) 1.13 11.57 5.89 35.37 2.89 2.01 3.52 37.61 100
Iberian 2000 21580 10349 57623 4530 3341 5752 55617 160792
(%) 1.24 13.42 6.44 35.84 2.82 2.08 3.58 34.59 100
  1. The number of transcripts assembled with Cufflinks and the percentage they represent in each sample. The high number of assembled transcripts is probably an artifact due to truncated Cufflinks assemblies. Class codes described by Cuffcompare: "=" Exactly equal to the reference annotation, "c " Contained in the reference, annotation, "e" possible pre-mRNA molecule, "i " An exon falling into a intron of the reference, "j " New isoforms, "o" Unknown, generic overlap with reference, "p" Possible polymerase run-on fragment, "u" Unknown, intergenic transcript.