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Table 4 Genetic variation detected by different methods (size in base pairs).

From: Global assessment of genomic variation in cattle by genome resequencing and high-throughput genotyping

Method Type Number Min. Median Max Length
Mosaik+GigaBayes+CLC+BWA+SMALT+SAMtools SNP 2,859,650     2,859,650
SAMtools+Dindel indel 197,895 1 1 12 349,248
BreakDancer (mate-pair) indel, inv, transl 8,596 42 122 127,536 6,286,578
Pindel (split-read) indel, inv 1,416 13 22 855,018 1,147,264
CNV-seq+Nimblegen6.3M+Illumina770 k CNV 46 3,170 25,812 595,739 3,889,717
Total   3,067,603 1   855,018 14,532,457
  1. inv denotes inversion, transl denotes translocation.