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Table 2 Statistics of functional annotation of transcripts

From: De novo assembly of Euphorbia fischeriana root transcriptome identifies prostratin pathway related genes

Annotated Proteins # transcripts % Total transcripts
a) Protein-coding genes
Similar to known proteins 8,834 48.57%
Conserved hypothetical proteins 6,356 34.95%
Hypothetical proteins (ORF > = 80aa) 819 4.50%
Subtotal 16,009 88.06%
b) Non-coding RNA genes
Putative long ncRNAs 2,158 11.87%
tRNA genes 5 (12)a,b 0.06%
Pseudo tRNA genes 2 0.01%
rRNA genes 6 0.03%
Subtotal 2,171 (20)a 11.94%
Total number of assembled transcripts 18,180 (18,187)a 100%
  1. aTotal number of tRNAs including four tRNAs identified in a transcriptome assembly using a shorter k-mer size of 17 and a minimum transcript length of 100 bp.
  2. btranscripts EFI_002280 and EFI_003197 encodes three and two tRNA genes, respectively.