Table 2 Sequence features of newly inserted Alu repeats.
From: Genetic and epigenetic variations contributed by Alu retrotransposition
Sample | Chromosome coordinate | Alu subfamily | TSD | Putative cleavage site | Poly-A sequence |
|---|---|---|---|---|---|
AI-1 | chr15:61216453-61216621 | AluY | AAGAAATGTTCT | TTAA | CTCAAAAAAAAAAAAAAAGAAAAAAAAAAAAGAAAAAAGAAAT |
AI-2 | chr5:139595078-139595241 | AluYb8 | TAAATTACAGA | TTAAA | CTCAAAAAAAAAAAAAAAATAAATAAATAAATAAATTA |
AI-3 | chr4:41598260-41598327 | AluY | AAGTACATGTGG | TGGAA | CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGT |
AI-4 | chr13:23662855-23663027 | AluYa5 | CATCTG | TTAAAA | CTCCGTCTCAAAAAAAAAAAAAACAAAAAAAAAAACAAAAAAAAAAAACATCT |
AI-5 | chr15:28179309-28179438 | AluY | ATAAAACATGGTCTG | TATAAAA | CTCAAAAAAAAAAAAAAAATAAAAAAAAATAAATAAAAAAATAAAACAT |
AI-6 | chr12:32076361-32076491 | AluYg6 | GAAATAATTGATCT | TGAAA | CTCAAAAAAAAAAAAAAAAAAAAAGAAATAAT |
AI-7 | chr11:130675880-130675924 | AluY | AAAAAGAAGC | TTAAAA | CTCAAAAAAAAAAAAAAAAAAAAGAAGCA |
AI-8 | chr5:141758572-141758694 | AluYb8 | AAAAATGGGGATT | TTAAAA | CTCAAAAAAAAAAAAAAAAAATGGGGA |
AI-9 | chr10:107891481-107891638 | AluYg6 | CGTGTGCTC | TTAAAA | CTCAAAAAAAAAAACGTGTG |
AI-10 | chr10:72605338-72605440 | AluYg6 | AAGAAGGTA | TAA | CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGGT |
AI-11 | chr2:48276482-48276601 | AluYb8 | AGAAATTCAAATGCA | TTA | CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAT |
AI-12 | chr5:16716576-16716677 | AluYg6 | AAGAAGTATGACAG | TAA | CTCAAAAAAAAAAAAAAAAAAAAGAAGTAT |
AI-13 | chr12:24518543-24518646 | AluY | AAAAAAGTATTAATCA | TTAAAA | CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTAT |
AI-14 | chr6:57403535-57403610 | AluY | TCCTA | TAAT | CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTCC |
AI-15 | chr2:9888790-9888862 | AluYb8 | CACACCCGTG | TAA | CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACAC |
AI-16 | chr9:1631754-1631884 | AluYb8 | AAGAA | CAAA | CTCAAAAAAAAAAAAAAAAAAAAAGAAAACA |
AI-17 | chr4:139225139-139225274 | AluY | GAGTTTTTAAACATCT | TTAAA | CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAGT |
AI-18 | chr2:26623669-26623732 | AluYb8 | AAAATCAGTTCTTCC | TTAAAA | CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCAGTT |
AI-19 | chr9:37594172-37594310 | AluY | AAGAAGTAGATATGG | TAA | CTCCAAAAAAAAAAAAAAGAAG |
AI-20 | chr6:99872263-99872632 | - | - | - | - |
AI-21 | chr2:145175223-145175483 | - | - | - | - |