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Table 2 Sequence features of newly inserted Alu repeats.

From: Genetic and epigenetic variations contributed by Alu retrotransposition

Sample Chromosome coordinate Alu subfamily TSD Putative cleavage site Poly-A sequence
AI-1 chr15:61216453-61216621 AluY AAGAAATGTTCT TTAA CTCAAAAAAAAAAAAAAAGAAAAAAAAAAAAGAAAAAAGAAAT
AI-2 chr5:139595078-139595241 AluYb8 TAAATTACAGA TTAAA CTCAAAAAAAAAAAAAAAATAAATAAATAAATAAATTA
AI-3 chr4:41598260-41598327 AluY AAGTACATGTGG TGGAA CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGT
AI-4 chr13:23662855-23663027 AluYa5 CATCTG TTAAAA CTCCGTCTCAAAAAAAAAAAAAACAAAAAAAAAAACAAAAAAAAAAAACATCT
AI-5 chr15:28179309-28179438 AluY ATAAAACATGGTCTG TATAAAA CTCAAAAAAAAAAAAAAAATAAAAAAAAATAAATAAAAAAATAAAACAT
AI-6 chr12:32076361-32076491 AluYg6 GAAATAATTGATCT TGAAA CTCAAAAAAAAAAAAAAAAAAAAAGAAATAAT
AI-7 chr11:130675880-130675924 AluY AAAAAGAAGC TTAAAA CTCAAAAAAAAAAAAAAAAAAAAGAAGCA
AI-8 chr5:141758572-141758694 AluYb8 AAAAATGGGGATT TTAAAA CTCAAAAAAAAAAAAAAAAAATGGGGA
AI-9 chr10:107891481-107891638 AluYg6 CGTGTGCTC TTAAAA CTCAAAAAAAAAAACGTGTG
AI-10 chr10:72605338-72605440 AluYg6 AAGAAGGTA TAA CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGGT
AI-11 chr2:48276482-48276601 AluYb8 AGAAATTCAAATGCA TTA CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAT
AI-12 chr5:16716576-16716677 AluYg6 AAGAAGTATGACAG TAA CTCAAAAAAAAAAAAAAAAAAAAGAAGTAT
AI-13 chr12:24518543-24518646 AluY AAAAAAGTATTAATCA TTAAAA CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTAT
AI-14 chr6:57403535-57403610 AluY TCCTA TAAT CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTCC
AI-15 chr2:9888790-9888862 AluYb8 CACACCCGTG TAA CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACAC
AI-16 chr9:1631754-1631884 AluYb8 AAGAA CAAA CTCAAAAAAAAAAAAAAAAAAAAAGAAAACA
AI-17 chr4:139225139-139225274 AluY GAGTTTTTAAACATCT TTAAA CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAGT
AI-18 chr2:26623669-26623732 AluYb8 AAAATCAGTTCTTCC TTAAAA CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCAGTT
AI-19 chr9:37594172-37594310 AluY AAGAAGTAGATATGG TAA CTCCAAAAAAAAAAAAAAGAAG
AI-20 chr6:99872263-99872632 - - - -
AI-21 chr2:145175223-145175483 - - - -