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Table 2 R-STAT analysis for the life cycle stages of B. terrestris.

From: Polyphenism in social insects: insights from a transcriptome-wide analysis of gene expression in the life stages of the key pollinator, Bombus terrestris

BTT_contig

Functional description

Best BLAST Match and GenBank Accession [species]

Read counts per contig

    

Larvaa

Pupab

Worker1c

Worker2d

Malee

Gynef

Totalg

R-value

BTT05460_1

Alpha-glucosidase

Alpha-glucosidase [B. ignitus]

BAI44030.1

110

6

2677

6080

27

3

8903

10101

BTT05364_1

Allergen-related

PREDICTED: similar to CG4409-PA [A. mellifera]

XP_001123230.1

5518

1

0

0

0

1

5520

8977

BTT03121_2

Endocuticle structural glycoprotein

Endocuticle structural glycoprotein SgAbd-1 [C. floridanus]

EFN60841.1

5208

3

0

0

0

0

5211

8466

BTT05275_2

Hexamerin

Hexamerin [A. mellifera]

ABR45904.1

41

45

434

16

55

4884

5475

7619

BTT05433_2

Hexamerin

Hexamerin 110 [A. mellifera]

ABU92559.1

283

3384

0

0

0

0

3667

6628

BTT05434_1

Peregrin-like

PREDICTED: similar to CG1845-PA [A. mellifera]

XP_395348.2

34

2638

38

21

26

38

2795

5011

BTT05442_1

Hexamerin

Hexamerin 110 [A. mellifera]

NP_001094493.1

119

2428

0

0

1

1

2549

4834

BTT05434_2

Beta-ureidopropionase

PREDICTED: similar to beta-ureidopropionase isoform 1 [A. mellifera]

XP_392773.2

17

2489

34

20

32

18

2610

4805

BTT35255_1

Hexamerin

Hexamerin 110 [A. mellifera]

ABU92559.1

346

2376

0

0

0

0

2722

4551

BTT20945_1

Hexamerin

Hexamerin 110 [A. mellifera]

BAI82215.1

147

2304

0

1

0

0

2452

4547

BTT17751_1

Short-chain dehydrogenase/Reductase

Short-chain dehydrogenase/reductase [A. mellifera]

NP_001011620.1

0

1760

0

0

0

0

1760

3708

BTT05366_1

Endocuticle structural glycoprotein

PREDICTED: similar to CG7658-PA [A. mellifera]

XP_001120498.1

2153

0

0

0

0

0

2153

3489

BTT23482_1

Hexamerin

Hexamerin [A. mellifera]

ABR45905.1

1

1633

0

1

0

1

1636

3423

BTT35822_1

Hexamerin

Hexamerin [A. mellifera]

ABR45905.1

0

1585

0

0

0

0

1585

3337

BTT18911_1

Hexamerin

Hexamerin 70b [A. mellifera]

NP_001011600.1

2947

15

337

88

99

177

3663

3289

BTT07410_1

Vitellogenin

PREDICTED: hypothetical protein [A. mellifera]

XP_001121939.1

0

1512

0

0

0

1

1513

3177

BTT05437_1

Hexamerin

Hexamerin 70c [A. mellifera]

NP_001092187.1

1

1496

0

0

0

0

1497

3142

BTT20899_3

Sallimus

PREDICTED: similar to sallimus CG1915-PC, isoform C [A. mellifera]

XP_001121572.1

7

0

1176

1922

16

305

3426

2960

BTT20391_1

Bomboilitin

Bombolitin [B. ignitus]

ACY09649.1

5

1

1677

1691

9

837

4220

2944

BTT21092_1

Alpha-glucosidase

Alpha-glucosidase [B. ignitus]

BAI44030.1

31

1

766

1685

3

0

2486

2822

BTT05276_2

Allergen-related

Allergen-related G12 [H. saltator]

EFN86980.1

0

0

1948

819

2267

458

5492

2658

BTT38955_1

Beta-ureidopropionase

PREDICTED: similar to beta-ureidopropionase isoform 1 [A. mellifera]

XP_392773.2

8

1190

11

7

13

10

1239

2316

BTT24170_1

Hymenoptaecin

Hymenoptaecin [B. ignitus]

ACA04899.1

1

22

0

0

1345

1

1369

2227

BTT05294_1

Cytochrome P450

Cytochrome P450 4g15 [H. saltator]

EFN85148.1

106

29

1568

2115

576

762

5156

2201

BTT20843_1

Larval cuticle protein

PREDICTED: similar to CG30045-PA [A. mellifera]

XP_001120541.1

1355

0

0

0

0

0

1355

2187

BTT32853_1

Hexamerin

Hexamerin [A. mellifera]

ABR45905.1

1

943

0

0

0

0

944

1971

BTT24170_2

Hymenoptaecin

Hymenoptaecin [B. ignitus]

ACA04899.1

0

15

1

0

1171

0

1187

1948

BTT33135_1

Cytochrome P450

Cytochrome P450 4G11 [A. mellifera]

NP_001035323.1

84

10

1990

1472

541

827

4924

1944

BTT12993_1

Carbonic anhydrase

Hypothetical protein SINV_10521 [S. invicta]

EFZ18639.1

1732

8

134

49

252

30

2205

1937

BTT05272_1

Hypothetical protein

PREDICTED: similar to CG3246-PA [A. mellifera]

XP_395658.3

7

41

1792

871

1453

1399

5563

1916

  1. a = Total number of larva ESTs (n = 286501); b = Total number of pupa ESTs (n = 162608); c = Total number of worker1 ESTs (n = 318664); d = Total number of worker2 ESTs (n = 194969); e = Total number of male ESTs (n = 257318); f = Total number of gyne ESTs (n = 221683); g = Total number of ESTs (n = 1441743).
  2. Mapped read contributions from each sequenced life cycle stage were analyzed using R-STAT to identify contigs with potential differential expression. Read counts are provided for each life cycle stage with the corresponding R-value. BT_transcriptome_v2 contigs (BTT_contig) reference, functional description, best NCBI nonredundant (nr) BLAST match description and GenBank accession are provided for each contig.
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BMC Genomics

ISSN: 1471-2164

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