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Table 1 Viral Transcripts Detected Above Background

From: Coupled transcriptome and proteome analysis of human lymphotropic tumor viruses: insights on the detection and discovery of viral genes

Cell Line

Viral Status

Annotated Transcripts

Unannotated Transcripts

 

KSHV

EBV

KSHV

EBV

KSHV

EBV

MutuIII

-

+

0

28

0

1

BCBL-1

+

-

79

0

8

0

JSC-1

+

+

67

41

6

2

BC-1 (latent)

+

+

34

22

4

1

BC-1 (lytic)

+

+

74

30

8

1

  1. Detected transcripts: ≥1.25-fold over the reference sample
  2. + = virus-positive; - = virus-negative
  3. Total possible KSHV transcripts = 88 known/annotated, 9 unannotated/novel
  4. Total possible EBV transcripts = 89 known/annotated, 2 novel
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BMC Genomics

ISSN: 1471-2164

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