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Table 1 Viral Transcripts Detected Above Background

From: Coupled transcriptome and proteome analysis of human lymphotropic tumor viruses: insights on the detection and discovery of viral genes

Cell Line Viral Status Annotated Transcripts Unannotated Transcripts
  KSHV EBV KSHV EBV KSHV EBV
MutuIII - + 0 28 0 1
BCBL-1 + - 79 0 8 0
JSC-1 + + 67 41 6 2
BC-1 (latent) + + 34 22 4 1
BC-1 (lytic) + + 74 30 8 1
  1. Detected transcripts: ≥1.25-fold over the reference sample
  2. + = virus-positive; - = virus-negative
  3. Total possible KSHV transcripts = 88 known/annotated, 9 unannotated/novel
  4. Total possible EBV transcripts = 89 known/annotated, 2 novel
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BMC Genomics

ISSN: 1471-2164

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