Table 4 Comparison of assembly statistics of fully sequenced fish genomes1 and some pilot studies2.
From: A pilot study for channel catfish whole genome sequencing and de novo assembly
Species | Contig/scaffold3 N50(bp) | Number of contigs | Maximum contig/scaffold3 size (bp) | Average contig size (bp) | Total bases |
|---|---|---|---|---|---|
Zebrafish 1 | 25,000 | 119,136 | N/A | 11,856 | ~1 Gb |
Medaka 1 | 9,800 | 36,494 | N/A | 19,181 | ~700 Mb |
Tetraodon 1 | 16,000 | 49,609 | 258,000 | 6,289 | ~312 Mb |
Atlantic cod 1 | 7,128 | 135,024 | 117,463 | 4,658 | ~629 Mb |
Fugu 1 | 858,1153 | 45,024 | 7,245,4453 | 8,729 | ~393 Mb |
Atlantic salmon 2 | 13,455 | 158 | 38,211 | 6,827 | ~1 Mb |
Catfish 2 | 13,123 | 193 | 71,434 | 5,313 | ~1 Mb |