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Table 3 Distribution of 192 annotated transcripts (common to C and CT berries but differentially modulated during ripening) into eight clusters according to the gene expression trends.

From: Increasing the source/sink ratio in Vitis vinifera (cv Sangiovese) induces extensive transcriptome reprogramming and modifies berry ripening

  

CLUSTER 1

CLUSTER 2

CLUSTER 3

CLUSTER 4

CLUSTER 5

CLUSTER 6

CLUSTER 7

CLUSTER 8

  

Carbohydrate metabolic process

C

0

0

3

0

0

2

0

0

 

CT

0

3

0

0

0

0

2

0

Cell wall organization or biogenesis

C

0

4

6

0

0

1

0

0

 

CT

0

6

3

1

0

0

1

0

Cellular amino acid and derivative metabolic process

C

0

2

5

0

0

1

1

0

 

CT

1

5

1

1

0

0

0

1

Cellular homeostasis

C

0

2

3

0

0

1

0

0

 

CT

0

3

0

2

0

0

1

0

Cellular process

C

1

2

6

0

0

2

2

1

 

CT

0

6

1

2

0

2

2

1

Developmental process

C

0

1

4

1

0

3

0

1

 

CT

0

5

0

1

0

1

2

1

Generation of precursor metabolites and energy

C

0

0

27

1

0

0

0

0

 

CT

1

25

0

2

0

0

0

0

Hormone metabolic process

C

0

1

4

0

0

0

0

0

 

CT

0

4

1

0

0

0

0

0

Lipid metabolic process

C

0

2

4

0

0

1

0

1

 

CT

0

2

1

3

0

1

1

0

Nitrogen compound metabolic process

C

0

0

1

0

0

0

0

0

 

CT

0

1

0

0

0

0

0

0

Nucleic acid metabolic process

C

0

0

2

0

0

0

0

0

 

CT

0

2

0

0

0

0

0

0

Protein metabolic process

C

0

0

0

0

0

0

0

0

 

CT

0

0

0

0

0

0

0

0

Response to hormone stimulus

C

0

0

9

0

0

0

1

0

 

CT

0

7

0

2

0

1

0

0

Response to stress

C

0

1

7

0

0

2

4

2

 

CT

1

7

1

0

0

2

2

3

Secondary metabolic process

C

0

3

3

2

0

0

10

0

 

CT

0

4

2

2

0

9

0

1

Signal transduction

C

0

2

9

0

0

2

0

0

 

CT

0

8

1

2

0

0

2

0

Transcription

C

0

1

11

0

0

1

2

0

 

CT

0

9

0

3

0

2

1

0

Transport

C

0

3

8

3

0

3

3

1

 

CT

0

11

0

3

0

3

3

1

TOTAL DIFFERENTIAL MODULATED GENES per CLUSTER

C

1

24

112

7

0

19

23

6

 

CT

3

108

11

24

0

21

17

8

  1. In each cluster, transcripts are divided according to their functional categories.